Biology 9700/41 — October/November 2025
Cambridge A-Level · A Level Structured Questions · worked solutions for every part, with the mark scheme
Topics Inheritance · Classification, Biodiversity and Conservation · Selection and Evolution · Control and Coordination · Photosynthesis · Energy and Respiration · +2 more
Guinea pigs, Cavia porcellus, vary in the length and colour of their fur.
Fig. 1.1 shows a guinea pig with short black fur.
Fig. 1.1
Two genes that determine the length and colour of the fur occur at the A/a locus and the B/b locus. These two gene loci are on separate autosomal chromosomes.
- The allele A results in short fur.
- The allele a results in long fur.
- A is dominant to a.
- The allele B results in black fur.
- The allele b results in chocolate fur.
- B is dominant to b.
Answer
A guinea pig with short black fur must carry at least one A allele (for short fur) and at least one B allele (for black fur). Combining the possibilities at each locus independently gives four genotypes:
- AABB
- AABb
- AaBB
- AaBb
AABB, AABb, AaBB, AaBb
Background Concept
Each of the two fur genes — A/a for length and B/b for colour — sits at its own locus on a separate (autosomal) chromosome. Because the two loci are unlinked, the alleles assort independently. A dominant phenotype is produced whenever at least one dominant allele is present, so an organism showing the dominant trait can be either homozygous dominant or heterozygous at that locus.
Understanding the Question
The question asks for every genotype that could give a guinea pig with short, black fur. "Short" is the dominant phenotype at the A/a locus, and "black" is the dominant phenotype at the B/b locus.
Approach
Work out, for each locus independently, which genotypes are compatible with the dominant phenotype, then combine the two loci.
- Short fur: AA or Aa
- Black fur: BB or Bb
There are combinations.
Step-by-Step Reasoning
- At the A/a locus, the AA and Aa genotypes both produce short fur. The aa genotype would give long fur, which is excluded.
- At the B/b locus, the BB and Bb genotypes both produce black fur. The bb genotype would give chocolate fur, which is excluded.
- Combining: AA × {BB, Bb} = AABB, AABb; Aa × {BB, Bb} = AaBB, AaBb.
- Total: four genotypes — AABB, AABb, AaBB, AaBb.
Key Takeaways
- A dominant phenotype does not pin down a single genotype; homozygosity and heterozygosity both produce it.
- Where the genes are on separate chromosomes, the loci assort independently and the genotype combinations multiply: .
Common Mistakes
- Writing AAbb or aaBB — these give the wrong fur colour or length.
- Listing only AABB and AaBb and forgetting the other two heterozygous combinations.
- Confusing genotype with phenotype notation.
Things to Be Careful About
- Treat each locus on its own first, then combine.
- Use the exact allele pairings (AA, not A; Bb, not bB is also acceptable but be consistent).
A test cross could be used to determine the genotype of a female guinea pig with short black fur.
Describe the phenotype of the male guinea pig that could be used to carry out this test cross.
Answer
The male guinea pig used in the test cross must have the genotype aabb, giving the phenotype long, chocolate fur.
long, chocolate fur
Background Concept
A test cross is used to determine whether an organism showing a dominant phenotype is homozygous or heterozygous. The test-cross partner is the homozygous recessive at every locus under test, because it can only contribute recessive alleles. By examining the offspring, the unknown genotype can be read off.
Understanding the Question
A female with short black fur (dominant phenotypes at both loci) is to be test-crossed. The question asks for the phenotype of the male partner.
Approach
The male must be homozygous recessive at both loci — genotype aabb — so that he contributes only a and b alleles. The phenotype corresponding to aabb is read from the dominance rules: aa gives long fur and bb gives chocolate fur.
Step-by-Step Reasoning
- The test cross partner must be homozygous recessive at every locus under investigation.
- At the A/a locus, homozygous recessive is aa → long fur.
- At the B/b locus, homozygous recessive is bb → chocolate fur.
- Combining: the male's phenotype is long, chocolate fur.
Key Takeaways
- The test-cross partner must be homozygous recessive at every locus in the cross — being recessive at one locus only would not work for a dihybrid cross.
- Translating genotype to phenotype uses the dominance relationship given.
Common Mistakes
- Saying "long" or "chocolate" only — both recessive traits are required because the cross is dihybrid.
- Choosing aaBB or AAbb — these would not reveal heterozygosity at both loci.
Things to Be Careful About
- "Homozygous recessive" must mean at every relevant locus, not just one.
A black guinea pig with long fur that was homozygous at both loci was crossed with a chocolate guinea pig with short fur that was homozygous at both loci. The F1 offspring of this cross had short black fur. F1 offspring were mated together to produce the F2 offspring.
Complete the Punnett square to:
- show the cross between the F1 offspring
- predict the F2 offspring genotypes.
You should include the gametes in your answer.
State the ratio of F2 offspring phenotypes. You should include a key to link phenotypes to genotypes.
ratio of F2 offspring phenotypes: ______
Working
The two parental guinea pigs are both homozygous, so their genotypes are:
- Black, long fur (homozygous): aaBB
- Chocolate, short fur (homozygous): AAbb
Cross: aaBB × AAbb → all F1 are AaBb (short, black fur), as stated.
The F1 × F1 cross is therefore AaBb × AaBb. Because the two loci are on separate chromosomes, the alleles assort independently and each F1 parent produces four gamete types: AB, Ab, aB, ab.
Answer
Ratio of F2 offspring phenotypes:
Key (genotype → phenotype):
| Genotype | Phenotype |
|---|---|
| A_B_ (9/16) | short, black |
| A_bb (3/16) | short, chocolate |
| aaB_ (3/16) | long, black |
| aabb (1/16) | long, chocolate |
9 short black : 3 short chocolate : 3 long black : 1 long chocolate
Background Concept
When two genes are on separate (non-homologous) chromosomes, they obey Mendel's law of independent assortment: during meiosis I, the bivalents orient randomly at the metaphase plate, so each gamete receives one allele from each locus independently. A dihybrid (heterozygous at two loci) therefore produces genetically distinct gametes in equal proportions. A cross between two dihybrids produces a characteristic phenotypic ratio in the F2, provided both genes show complete dominance and are unlinked.
Understanding the Question
The P generation is built from two homozygous parents with different dominant phenotypes. The black long-fur parent must be aaBB (long because recessive aa, black because dominant BB). The chocolate short-fur parent must be AAbb (short because dominant AA, chocolate because recessive bb). Crossed, every F1 receives A from one parent and a from the other, and B from one parent and b from the other — all F1 are therefore AaBb and phenotypically short, black. The question asks the student to:
- Show the F1 × F1 gametes.
- Complete the Punnett square to give all 16 F2 genotypes.
- State the F2 phenotype ratio with a key linking each phenotype to its genotypes.
Approach
- Treat the F1 × F1 cross as a standard dihybrid cross.
- Use independent assortment to list the four gametes per parent.
- Fill the 4 × 4 grid.
- Group the 16 F2 cells into the four phenotype classes by inspection of the genotype.
- Express the phenotype counts as a ratio and attach a key.
Step-by-Step Reasoning
Step 1 — Gametes. Each F1 (AaBb) makes four gametes:
- AB — one from each dominant allele
- Ab — dominant length, recessive colour
- aB — recessive length, dominant colour
- ab — both recessive
All four are equally likely because the loci are on separate chromosomes.
Step 2 — Punnett square. Combining each pair of gametes (4 × 4 = 16 F2 genotypes) gives the standard dihybrid grid: one AABB, two AABb, two AaBB, four AaBb, one AAbb, two Aabb, one aaBB, two aaBb, one aabb.
Step 3 — Phenotype classes. Reading off the grid:
- Short, black: any cell with at least one A and at least one B → AABB, AABb, AaBB, AaBb = 9 cells.
- Short, chocolate: at least one A and bb → AAbb, Aabb = 3 cells.
- Long, black: aa with at least one B → aaBB, aaBb = 3 cells.
- Long, chocolate: aabb only = 1 cell.
Step 4 — Ratio. , with a key linking each phenotype to the genotype(s) (e.g. A_B_ for short black, A_bb for short chocolate, aaB_ for long black, aabb for long chocolate).
Key Takeaways
- Two unlinked dihybrids produce a F2 ratio, and only a ratio (or its variants under codominance / epistasis) — deviation suggests linkage, a lethal allele, or a counting error.
- Showing the gametes is essential, because independent assortment (not random allele pairing) is what generates the four gamete types.
- The phenotype key is required so the ratio is unambiguous.
Common Mistakes
- Showing only one or two gamete types per parent — the grid then collapses and the ratio is wrong.
- Filling cells with phenotype abbreviations instead of genotypes.
- Quoting the ratio as or — those are monohybrid, not dihybrid, outcomes.
- Forgetting to attach a key linking each phenotype to its underlying genotype(s).
Things to Be Careful About
- Both F1 parents are heterozygous at both loci, so each makes four gametes, not two.
- Independent assortment is conditional on the two loci being on separate chromosomes — the stem states this explicitly.
- Genotypes must use paired allele symbols (AaBb, not AB/ab).
- The phenotype ratio must be presented in the same order in both the numbers and the key (short black first, long chocolate last).
Some genes in guinea pigs are structural genes and some are regulatory genes.
Describe the difference between a structural gene and a regulatory gene.
Answer
- A structural gene codes for a structural or functional protein (polypeptide), such as an enzyme, a structural protein of a tissue, or a transport protein.
- A regulatory gene codes for a transcription factor (or repressor protein) that controls the expression of other genes, switching them on or off (or up or down).
Structural gene: codes for a structural/functional protein/polypeptide. Regulatory gene: codes for a transcription factor/repressor that controls expression of other genes.
Background Concept
Not every gene codes for a protein that does a metabolic or structural job in the cell. Some genes code for proteins whose job is to regulate the expression of other genes. These two categories are called structural genes and regulatory genes.
- A structural gene is transcribed and translated into a polypeptide that performs a direct role in the cell — for example, an enzyme (such as rubisco or tyrosinase), haemoglobin, collagen, or an ion-channel protein.
- A regulatory gene is transcribed and translated into a protein (typically a transcription factor or a repressor) whose role is to bind to DNA near other genes and switch their transcription on or off, or modulate it. In prokaryotes, regulatory genes encode repressors such as the lac repressor; in eukaryotes, they encode transcription factors that bind promoters or enhancers.
Understanding the Question
The question asks for the difference between a structural gene and a regulatory gene. The mark scheme rewards two points: one for what each codes for, and one for the regulatory gene's role in controlling other genes' expression. Both halves of the contrast must be present for full marks.
Approach
Identify the two gene types and state, for each:
- The product it codes for.
- The role of that product in the cell.
Step-by-Step Reasoning
- A structural gene codes for a protein that has a direct function in the cell — most often an enzyme, but also structural proteins (collagen, keratin), transport proteins (haemoglobin, membrane pumps), or signalling molecules. Such proteins are the molecular workhorses of metabolism and structure.
- A regulatory gene codes for a protein that does not carry out a metabolic role itself; instead it regulates the expression of other (usually structural) genes. In prokaryotes this is the role of the lacI gene, which produces the lac repressor; in eukaryotes, regulatory genes encode transcription factors that bind DNA sequences to switch transcription on or off.
Key Takeaways
- The contrast is product and role: structural genes produce functional/structural proteins; regulatory genes produce regulators of gene expression.
- "Regulatory" describes what the protein does (control other genes), not a separate class of DNA sequence.
Common Mistakes
- Vague answers such as "a structural gene makes proteins" without naming structural/functional, and "a regulatory gene controls things" without naming transcription factors or other genes.
- Saying that regulatory genes "control cell activities" — too broad; they specifically control gene expression.
- Confusing the two (e.g. saying a structural gene controls other genes).
Things to Be Careful About
- Both halves of the description must be present: the product and the function.
- "Controls expression of other genes" is the precise wording; "controls traits" or "controls metabolism" is not credited.
Exserohilum turcicum is a fungal pathogen. The growth of the mycelium of the fungus damages the leaves of maize plants, Zea mays. Leaf damage reduces crop yield.
Complete Table 2.1 to show one structural difference and one functional difference between E. turcicum and Z. mays.
Table 2.1
| E. turcicum | Z. mays | |
|---|---|---|
| structural difference | ||
| functional difference |
Answer
| E. turcicum | Z. mays | |
|---|---|---|
| structural difference | (mycelium of) hyphae / long, branching, multinucleate cells with chitin cell walls and no chloroplasts | cells are not hyphae / uninucleate with cellulose cell walls and chloroplasts |
| functional difference | heterotroph(ic) / parasitic / obtains food from host (does not photosynthesise) | autotroph(ic) / photosynthetic |
Marking points (1 mark each):
- Structural difference: E. turcicum has chitin cell wall (or no chloroplasts, or hyphae/long branching cells, or multinucleate cells); Z. mays has the contrasting feature (cellulose cell wall, chloroplasts, no hyphae, uninucleate).
- Functional difference: E. turcicum is heterotrophic/parasitic; Z. mays is autotrophic/photosynthetic.
Structural: E. turcicum has a chitin cell wall (and no chloroplasts) whereas Z. mays has a cellulose cell wall (and chloroplasts). Functional: E. turcicum is heterotrophic/parasitic whereas Z. mays is autotrophic/photosynthetic.
Background Concept
Exserohilum turcicum is a fungus (kingdom Fungi) and Zea mays (maize) is a flowering plant (kingdom Plantae). Although both are eukaryotes, fungi and plants differ in fundamental cell biology and nutrition.
Key structural contrasts:
- Fungi have cell walls made of chitin (the same polymer in arthropod exoskeletons), whereas plant cell walls are made of cellulose. Fungi lack chloroplasts and so do not photosynthesise. The fungal body (mycelium) consists of hyphae — long, branching, often multinucleate (coenocytic/syncytial) tubular cells. Plants are built of discrete, uninucleate cells organised into tissues.
- Functional contrast: fungi are heterotrophs (specifically parasites, saprotrophs or mutualists) that obtain organic carbon from a host or substrate, whereas plants are autotrophs that fix inorganic carbon through photosynthesis.
Understanding the Question
The question gives a partly completed table and asks the candidate to enter ONE structural and ONE functional difference. The mark scheme requires the E. turcicum cell of each row; the Z. mays cell is then effectively the logical opposite, but a complete answer makes the contrast explicit so the examiner can award the mark.
Approach
Pick the strongest, most obvious contrast for each row:
- For structure, choose between cell-wall chemistry (chitin vs cellulose), chloroplasts (absent vs present) or cellular organisation (hyphae vs discrete cells). Cell-wall chemistry is the cleanest, single-word contrast.
- For function, the nutritional mode contrast (heterotroph vs autotroph) is the standard expected answer.
Step-by-Step Reasoning
- Structural difference: E. turcicum — chitin cell wall (or hyphae, or no chloroplasts, or multinucleate cells). The corresponding Z. mays entries are: cellulose cell wall, no hyphae, chloroplasts present, one nucleus per cell. Each comparison pair earns one mark.
- Functional difference: E. turcicum — heterotrophic / parasitic / saprotrophic (derives organic carbon from a host). Z. mays — autotrophic / photosynthetic (synthesises organic carbon from CO₂ using light).
Key Takeaways
- Fungi are distinguished from plants by chitin in their walls, absence of chloroplasts and hyphal organisation.
- A simple way to remember fungi vs plants in functional terms: fungi eat (heterotrophs), plants make (autotrophs).
Common Mistakes
- Writing "cell wall" with no material — examiners will not credit a difference unless the wall composition is named.
- Saying fungi "have chloroplasts" (they do not) or plants "have chitin" (they do not).
- Calling E. turcicum "autotrophic" because it lives on a plant — being parasitic is heterotrophy, not autotrophy.
Things to Be Careful About
- Only ONE structural difference is needed; the second mark is for the functional difference. Adding extra incorrect rows in the answer wastes time and may introduce contradictions.
- Use the precise terms chitin and cellulose — vague alternatives like "different cell wall" are not credited.
Describe the principles by which organisms such as E. turcicum and Z. mays are classified in the taxonomic hierarchy.
Answer
- Organisms are placed in a hierarchy of progressively smaller groups (large groups divide into smaller groups) so that related organisms share a recent common ancestor / similar features.
- Members within a group share common / similar features (e.g. cell structure, mode of nutrition) and the features used to define a group are similar for all members.
- The hierarchy is, in descending order: kingdom → phylum → class → order → family → genus → species (any four of these earn the mark).
- The genus and species together form the binomial (Linnaean / Latin / scientific) name, e.g. Exserohilum turcicum and Zea mays; the genus is capitalised and the species is lower-case, and both are written in italics.
- E. turcicum (kingdom Fungi) and Z. mays (kingdom Plantae) belong to different kingdoms but are both in the domain Eukarya (so they share eukaryotic cell features).
Organisms are arranged in a hierarchy of progressively smaller groups (kingdom → phylum → class → order → family → genus → species) based on shared features; the genus + species gives the binomial name (e.g. E. turcicum, Z. mays); the two species are in different kingdoms (Fungi and Plantae) but share the same domain (Eukarya).
Background Concept
Biological classification (taxonomy) is a hierarchical system that places every named organism into a series of nested groups. The classical Linnaean hierarchy, from largest to smallest, is:
Modern classification adds domain above kingdom (three domains: Archaea, Bacteria, Eukarya). The genus + species pair forms the binomial name, written in italics with the genus capitalised (e.g. Zea mays, Exserohilum turcicum). Members of the same group share a more recent common ancestor and a defined set of features (morphological, physiological, genetic).
Understanding the Question
The question asks the candidate to describe the principles by which E. turcicum and Z. mays are placed in this hierarchy. "Principles" means the rules/logic of the system, not the rank of a single species. The mark scheme looks for four marks covering: the idea of nested groups, similarity within a group, naming the ranks, binomial nomenclature, and the kingdom/domain placement of the two given species.
Approach
Think of the answer in three layers:
- The structural idea (groups within groups, defined by shared features).
- The named ranks (at least four of the seven standard ranks).
- The specific position of the two example species (different kingdoms, same domain Eukarya; genus + species = binomial).
Step-by-Step Reasoning
- Hierarchy / nested groups: classification divides living things into progressively smaller groups based on shared features; related organisms share more recent common ancestry. (Mark 1)
- Within-group similarity: members of the same taxon share common/similar features (cell structure, biochemistry, morphology, genetics). (Mark 2 — if Mark 1 alone is not enough)
- Named ranks: kingdom, phylum, class, order, family, genus, species — at least four correctly named earn a mark. (Mark 3)
- Binomial nomenclature: the two-part name (genus + species) is the Linnaean/Latin/scientific name; italicised, genus capitalised. Examples: Exserohilum turcicum (genus Exserohilum, species turcicum) and Zea mays. (Mark 4)
- Kingdoms and domain (often added to reach the fourth mark or to reinforce it): E. turcicum is in kingdom Fungi; Z. mays is in kingdom Plantae; both are in domain Eukarya (so they share eukaryotic cellular features but differ in kingdom-level features such as cell-wall composition and nutrition).
Key Takeaways
- Classification is hierarchical: every species sits in a series of nested groups defined by shared features.
- The binomial is two Latinised words: genus (capital, italic) and species (lower-case, italic).
- E. turcicum (Fungi) and Z. mays (Plantae) are both eukaryotes but belong to different kingdoms.
Common Mistakes
- Confusing the direction of the hierarchy (saying species is the largest group — it is the smallest).
- Mixing up genus and species: the species is the second word, not the first.
- Writing Exserohilum turcicum without italics or with the species capitalised (binomial formatting).
- Stating "they are in the same kingdom" (they are not — they are in different kingdoms, Fungi and Plantae).
Things to Be Careful About
- The CIE 9700 syllabus uses the rank names above; use exactly these terms.
- "Three domains" is a separate concept from "five (or six) kingdoms" — both are valid, but domain sits above kingdom.
Two inbred varieties of maize, SKV50 and CML153, were crossed. The resulting F1 hybrids were self-crossed to produce F2 offspring. The F2 plants were grown, and the percentage area of leaf damage caused by E. turcicum was measured.
Fig. 2.1 shows the results for the F2 generation. The arrows show the mean percentage area of leaf damage for the two parent varieties.
Fig. 2.1
Explain how Fig. 2.1 can be used to determine which parent maize variety shows the greatest resistance to infection by E. turcicum.
Answer
- The lower the percentage of leaf damage, the greater the resistance of the plant to infection by E. turcicum.
- From Fig. 2.1, the mean leaf damage for SKV50 is ~22% and the mean leaf damage for CML153 is ~58%.
- Therefore, SKV50 shows greater resistance to infection by E. turcicum than CML153.
SKV50 (mean leaf damage ≈ 22%) shows the greater resistance to infection, compared with CML153 (≈ 58%) — the lower the percentage leaf damage, the greater the resistance.
Background Concept
Resistance in plant pathology means the ability of a plant to limit pathogen growth, infection and the resulting damage. If a variety shows a smaller percentage of leaf area damaged by a fungal pathogen, it is more resistant (or less susceptible) than a variety that shows a larger damaged area. The mean of each parent's distribution, shown by the arrows in Fig. 2.1, is a direct read-out of average damage.
Understanding the Question
The question asks the candidate to explain how the figure is used to compare the resistance of the two parent varieties. The explanation must therefore (a) state the inverse relationship between damage and resistance and (b) use the values from the figure to identify which variety is more resistant. The mark scheme awards a mark each for the principle, the values, and the conclusion.
Approach
- Step 1: link the direction of the measurement (more damage) to the opposite of resistance.
- Step 2: read the two arrow positions on the x-axis.
- Step 3: state which variety is therefore more resistant.
Step-by-Step Reasoning
- The arrows on the x-axis mark the mean percentage area of leaf damage for each parent. The lower the value, the smaller the proportion of leaf area destroyed by E. turcicum, so the more resistant the variety.
- SKV50's arrow sits at ~22% damage; CML153's arrow sits at ~58% damage.
- Because 22% < 58%, SKV50 is damaged less and is therefore the more resistant variety.
Key Takeaways
- A low value of the damage axis = a high value of resistance (inverse relationship).
- Bar charts and overlaid distributions let you read a population mean directly from a labelled arrow or by eye.
- Resistance is a quantitative, not all-or-nothing, trait here — both parents are attacked to some extent, but differ in average damage.
Common Mistakes
- Saying SKV50 is "immune" — the data only show it is more resistant (still ~22% damage), not immune.
- Confusing the two arrows (CML153 is the right-hand arrow at ~58% — the more damaged parent).
- Saying "SKV50 has higher resistance because its bar is taller" — the bars in the middle of the distribution are the F2 offspring, not the parents; the parents are the labelled arrows on the x-axis.
Things to Be Careful About
- The arrows sit on the x-axis (not at the top of a bar); they indicate the parent means, not the F2 means.
- The peak of the F2 distribution (~38–40% damage) is the F1-cross hybrid mean, intermediate between the two parents — useful context but not what the question asks.
Answer
Continuous (variation).
The F2 distribution in Fig. 2.1 is unimodal and bell-shaped (approximately normal), with no discrete categories — the percentage area of leaf damage takes any value across a range, which is the hallmark of continuous variation.
Continuous variation.
Background Concept
Variation between individuals in a population is classified as either discontinuous (a few discrete, qualitative categories with no intermediates — e.g. blood groups, Mendelian phenotypes) or continuous (a smooth range of values with no clear boundaries — e.g. height, mass, percentage leaf damage). A continuously varying trait typically shows a bell-shaped (normal) distribution when plotted as a frequency histogram.
Understanding the Question
The question is a one-mark state: the candidate must name the type of variation the F2 generation shows. The figure makes the answer unambiguous: a single, smooth, bell-shaped distribution across a numerical axis.
Approach
Look at the shape of the distribution and the nature of the trait (a percentage, i.e. a quantitative measurement) — both point to continuous variation.
Step-by-Step Reasoning
- The trait (percentage area of leaf damage) is a quantitative measurement that can take any value in a range.
- The F2 histogram is unimodal and roughly symmetric, without gaps between categories.
- This is the textbook signature of continuous variation.
Key Takeaways
- Continuous variation → many phenotypic classes, normal distribution, quantitative trait.
- Discontinuous variation → few discrete classes, qualitative trait.
Common Mistakes
- Saying "polygenic" instead of "continuous" — the question asks for the type of variation, not the genetic cause.
- Saying "discontinuous" because there are bars — bars alone do not indicate discontinuity; the lack of clear gaps does.
Things to Be Careful About
- "Continuous variation" is a phenotype-level description; the genetic basis (polygenic + environmental) is a separate idea, addressed in (b)(iii).
Answer
- Resistance to E. turcicum (and hence percentage leaf damage) is controlled by many / several / multiple genes (it is a polygenic trait).
- All of these genes affect the same trait (resistance to / damage by E. turcicum).
- Different alleles of each gene have only a small effect on the phenotype, so no single gene produces a large, discrete Mendelian ratio.
- The effects of alleles at different loci are additive / combined / interactive (together they produce the full range of phenotypes from highly resistant to highly susceptible).
- Mathematical illustration: if two genes A and B each have alleles A/A and B/B that contribute +1 unit of resistance and a/a and b/b that contribute 0, then AABB = 4, AABb/AAbB = 3, AaBb = 2, etc., giving five distinct phenotypic classes that merge into a smooth, bell-shaped distribution. Combined with environmental variation, the F2 forms a continuous distribution.
Because each F2 individual inherits a random combination of alleles at all these loci, the population shows a wide, approximately normal distribution of leaf damage — i.e. continuous variation.
Percentage leaf damage is a polygenic trait: many genes act on the same trait, each allele has a small effect, and the effects of alleles at different loci are additive; the random combination of alleles at all these loci in the F2 produces a continuous, bell-shaped distribution of phenotypes.
Background Concept
Continuous variation is generated when a quantitative trait is influenced by:
- Many genes (polygenic inheritance), each contributing a small effect;
- Additive allele action — each "favourable" allele adds a small increment to the phenotype, and the total is the sum across loci;
- Often a significant environmental component (in the F2 here, the same inoculum and growth conditions reduce environmental noise, but micro-environmental differences between plants still contribute).
The genetic model is straightforward: imagine unlinked loci, each with two alleles (A vs a, B vs b, …). The "uppercase" allele at each locus adds a fixed increment to resistance; the "lowercase" allele adds nothing. An individual's resistance is:
The number of uppercase alleles a diploid offspring can carry at loci ranges from to , so discrete genotypic classes are produced. With large (e.g. 10 loci → 21 classes), the classes overlap and the population appears continuous, producing a bell-shaped distribution when plotted.
Understanding the Question
The question asks for the genetic basis of the F2 distribution. The mark scheme rewards four key ideas: many genes, same trait, small allele effects, additive effects — and gives an extra mark for a numerical illustration. This is a classic polygenic / quantitative-genetics explanation.
Approach
State the four ideas in order, then optionally illustrate with a numerical example (two genes → five classes is the simplest demonstration).
Step-by-Step Reasoning
- Many genes: leaf damage is influenced by multiple genes (it is polygenic, not monogenic).
- Same trait: every one of those genes affects the same phenotype (resistance / % leaf damage).
- Small individual effects: each allele at each gene has only a small effect on the trait — so no single gene segregates in a simple Mendelian ratio.
- Additive effects: the effects of alleles at different loci are additive / combined / interactive. More "resistance" alleles across all loci → less damage; fewer → more damage.
- Mathematical illustration (optional fifth mark): with two unlinked genes A and B, AABB (4 favourable alleles) is most resistant, aabb (0 favourable alleles) is least resistant, and the three intermediate genotypes AABb, AaBB, AaBb, Aabb, aaBb give the intermediate damage values. With more genes the classes merge into a smooth distribution. This, plus environmental variation, produces the bell-shaped F2 distribution in Fig. 2.1.
The F2 distribution's mean (~38–40% damage) is intermediate between the two parents (22% and 58%), exactly as expected for a polygenic trait where many allele combinations are reshuffled by meiosis and random fertilisation.
Key Takeaways
- Continuous variation = polygenic + additive + often environmental.
- Each gene has a small effect, but the sum of effects at many loci produces a wide, smooth phenotypic range.
- The F2 of a cross between two inbred lines shows an intermediate mean and a normal distribution — a hallmark of polygenic traits.
Common Mistakes
- Saying the variation is caused by one gene with two alleles — this would give a simple Mendelian ratio, not a bell-shaped distribution.
- Using the word "polygenic" without saying what it means (many genes, each with a small effect, additive).
- Confusing the genetic basis (polygenic) with the descriptive name of the variation (continuous).
- Saying "alleles interact" without specifying how — the mark scheme requires the idea that effects are additive (each allele adds an increment), not merely that the genes are not independent.
Things to Be Careful About
- The explanation must be genetic; environmental contributions are not asked for here, but if mentioned, they should not replace the genetic points.
- "Many genes" is correct — do not commit to a specific number, but a numerical example (e.g. 2 or 5 genes) is welcome.
Plants have several different photosynthetic pigments in their chloroplasts.
A student separated and identified the chloroplast pigments present in a leaf extract from a spinach plant using two slightly different methods.
Method A
- A type of chromatography known as thin layer chromatography (TLC) was used to separate the pigments.
- A mixture of ether and cyclohexane was used as a solvent in TLC.
Method B
- The student repeated TLC but treated the spinach leaf extract with a chemical. The chemical causes a magnesium ion in a pigment to be replaced by two hydrogen ions.
- The student used a leaf from the same spinach plant, and used the same solvent as in method A.
The student calculated values and compared these to reference values to identify the pigments.
Fig. 3.1 shows the results for method A and method B.
Fig. 3.1
Working
The retention factor is defined as:
Measured on chromatogram A in Fig. 3.1, from the line of origin:
- distance moved by β-carotene ≈ 95 mm
- distance moved by solvent front ≈ 100 mm
Answer
0.95
0.95
Background Concept
Thin layer chromatography (TLC) separates a mixture of compounds (here, chloroplast pigments) according to how far each one travels up a stationary phase (a thin layer of silica or cellulose on a plastic or glass plate) carried by a moving solvent. Each pigment has a characteristic solubility in the solvent and a characteristic affinity for the stationary phase, so the distance it travels is reproducible under fixed conditions.
The retention factor, , is the numerical way to express this:
is always between 0 and 1, has no units, and is a fingerprint of a compound in a particular solvent system — so it can be used to identify an unknown by comparison with reference values.
Understanding the Question
The parent stem tells you that a student separated chloroplast pigments from a spinach leaf extract by TLC, using an ether / cyclohexane solvent. Fig. 3.1 shows the result — chromatogram A (no chemical treatment) and chromatogram B (with chemical treatment). Part (a)(i) asks you to calculate the of β-carotene from chromatogram A.
Approach
Locate the line of origin (where the extract was first applied) and the centre of the β-carotene spot in chromatogram A. Measure both the pigment's distance and the solvent-front distance from the line of origin, then divide pigment distance by solvent distance. Use a ruler on the printed figure; if you cannot measure exactly, estimate using the relative position — β-carotene sits very close to the solvent front, so the ratio is close to 1.
Step-by-Step Reasoning
- Identify the line of origin at the bottom of chromatogram A; both distances are measured from this line.
- Read the position of the β-carotene spot — the uppermost labelled spot in chromatogram A.
- Read the position of the solvent front — the highest point the solvent reached.
- On the printed figure these are approximately 95 mm and 100 mm respectively (any reasonable measured values that give a ratio close to 0.95 are acceptable).
- Substitute into the formula: .
- Quote the answer to two decimal places, with no units.
Key Takeaways
- is a ratio, so it is dimensionless and lies between 0 and 1.
- Both distances are measured from the same starting point — the line of origin, not the bottom of the plate.
- identifies a pigment only when the solvent and stationary phase are held constant; this is why values in the scientific paper may differ from your own.
Common Mistakes
- Measuring from the bottom of the plate rather than the line of origin, giving a wrong ratio.
- Quoting '0.95 mm' or '0.95 cm' — has no units.
- Using the difference between the two distances instead of the ratio.
- Using the wrong spot — for example, reading the chlorophyll a spot instead of β-carotene.
Things to Be Careful About
- Always measure from the centre of the spot, not the edges.
- Round to two decimal places (the precision the mark scheme expects).
- If the printed figure has a scale bar, use it; otherwise state that the measurement is taken from the line of origin.
Suggest two explanations for the differences in appearance of chromatograms A and B in Fig. 3.1.
1 ______
2 ______
Answer
-
Chromatogram B was run for a shorter time / stopped earlier, so the solvent front and the pigment spots did not travel as far up the plate as in chromatogram A.
-
The chemical in method B replaced the central Mg²⁺ ion in chlorophyll a and chlorophyll b with two H⁺ ions, converting them into phaeophytin a and phaeophytin b — which is why phaeophytin spots appear in chromatogram B but not in A.
B was run for less time and the chemical converted chlorophylls to phaeophytins.
Background Concept
Chlorophylls are porphyrin-ring pigments with a central magnesium ion (Mg²⁺) coordinated by four nitrogen atoms. If this Mg²⁺ is replaced by two hydrogen ions (H⁺), the molecule becomes a phaeophytin — a dull olive-brown pigment with different chromatographic and spectroscopic properties. The conversion happens readily when chlorophyll is exposed to dilute acid, and it is the reason cooked greens turn a duller colour.
In TLC, the distance a spot travels depends both on the pigment's chemistry and on how long the solvent is allowed to run. A longer run gives a higher solvent front and spots that are further from the line of origin — but the ratio for a given pigment should stay the same.
Understanding the Question
The parent stem tells you that method B is identical to method A except that the extract is first treated with a chemical that replaces Mg²⁺ with 2 H⁺ in a pigment. Both chromatograms use the same solvent and the same plant material, and Fig. 3.1 shows the outcome.
You are asked for two explanations of the visible differences between chromatograms A and B. The mark scheme accepts any two of:
- B was run for less time / stopped earlier;
- chlorophyll was converted to phaeophytin by the chemical;
- any additional valid point.
Approach
Examine Fig. 3.1 systematically:
- A has four pigment spots: β-carotene, chlorophyll a, chlorophyll b and xanthophyll.
- B has five pigment spots: β-carotene, phaeophytin a, phaeophytin b, chlorophyll b and xanthophyll.
- The β-carotene spot in B appears lower relative to its solvent front than in A.
Two independent differences explain everything you can see: (i) the chemical changed the chemistry of the pigments, producing phaeophytins; (ii) the chromatogram was developed for a different length of time.
Step-by-Step Reasoning
- The chemical in method B replaces Mg²⁺ with 2 H⁺ in the porphyrin head of the chlorophylls. Chlorophyll a → phaeophytin a; chlorophyll b → phaeophytin b.
- Phaeophytins are chemically distinct pigments with different solubilities in the ether–cyclohexane solvent, so they migrate as separate spots on chromatogram B.
- Chlorophyll a is no longer present in method B (it has been converted), so the chlorophyll a spot is absent from chromatogram B.
- The β-carotene spot in B sits lower relative to its solvent front than in A, indicating the solvent was allowed to run a shorter distance in method B. The relative compression of all spots in B is consistent with a shorter run.
Key Takeaways
- Chlorophyll and phaeophytin have different values because replacing Mg²⁺ with 2 H⁺ changes the polarity of the pigment.
- The further a solvent is allowed to run, the further the spots travel — but values (the ratio of spot distance to solvent-front distance) should be unchanged if only the run length differs.
- Comparing two chromatograms, look for both qualitative changes (new spots, missing spots) and quantitative changes (relative positions).
Common Mistakes
- Saying 'chlorophyll turned brown' — phaeophytin is the name; phaeophytin is still a pigment, not a destroyed pigment.
- Saying 'different pigments appeared' without naming phaeophytin.
- Attributing all the differences to only one variable (either run time or chemical treatment, but not both).
- Confusing chlorophyll a (still present in A) with phaeophytin a (only in B).
Things to Be Careful About
- The mark scheme explicitly rewards naming the conversion (chlorophyll → phaeophytin) and the shorter run time of B.
- Note that some chlorophyll b remains in B as well — the chemical treatment was apparently not 100% efficient, which is fine to mention but is not required.
The student found some different values for the chloroplast pigments of spinach in a scientific paper.
The values in the scientific paper were different from the reference values that the student originally used to identify the pigments on chromatograms A and B in Fig. 3.1.
Suggest one reason, other than measurement error, for the different values.
Answer
The scientific paper used a different solvent (or a different stationary phase / plate material, or a different temperature) from the one the student used, so the pigments moved different relative distances and the values no longer matched the student's reference table.
The scientific paper used a different solvent (or stationary phase or temperature).
Background Concept
The value of a pigment in TLC depends on the entire chromatographic system, not on the pigment alone. Three controllable variables are most important:
- the solvent (mobile phase) — its polarity and composition control how readily each pigment dissolves and travels;
- the stationary phase (e.g. silica, cellulose, type of TLC plate) — different materials bind pigments differently;
- the temperature — alters solvent behaviour and pigment solubility.
If any of these differs between two experiments, the values will differ too.
Understanding the Question
The stem says the student found values in a scientific paper that did not match the student's own reference values used to identify the pigments on chromatograms A and B. You are asked for one reason, other than measurement error, for the difference. The mark scheme accepts any one of: different solvent; different TLC plate / stationary phase; different temperature.
Approach
Identify a controllable variable in TLC that could plausibly differ between two labs and would alter the distances the pigments travel. The most common answer is 'different solvent', but the other two are equally valid.
Step-by-Step Reasoning
- is a ratio of the distance moved by the pigment to the distance moved by the solvent front. Anything that changes how a pigment partitions between the mobile and stationary phases will shift the ratio.
- If the scientific paper used, for example, an acetone–petroleum-ether mixture instead of the ether–cyclohexane mixture used in this experiment, every pigment's would shift.
- The shift is a real, reproducible difference in the system, not a measurement error.
Key Takeaways
- is only a reliable identifier when the solvent and stationary phase are held constant.
- Chromatography references always state the solvent system alongside values.
- If you want to compare values from two sources, you must first check that the chromatographic conditions match.
Common Mistakes
- Saying 'human error' or 'different person measuring' — the question explicitly excludes measurement error.
- Naming the variable but not saying how it changes the — both should be clear.
- Giving two reasons when only one is needed — not wrong, but the mark scheme credits a single clear reason.
Things to Be Careful About
- 'Different solvent' is the most common correct answer.
- Spelling: 'stationary' (not 'stationery'), 'solvent' (not 'soluvent').
- The mark scheme allows multiple equivalent wordings (e.g. 'different TLC plate', 'different chromatogram').
Fig. 3.2 shows the absorption spectra of some chloroplast pigments.
Fig. 3.2
Use Fig. 3.2 to compare the similarities and differences between the absorption spectra of chlorophyll and carotenoids.
Answer
Similarities:
- Both chlorophyll a and the carotenoids absorb strongly in the blue region of the visible spectrum (approximately 400–475 nm).
- Both absorb very little or no light in the green / yellow region (approximately 525–600 nm).
Differences:
- Chlorophyll a absorbs over a wider range of wavelengths because it has a second prominent absorption peak in the red region (~660 nm); the carotenoids do not absorb in the red region at all.
- In the blue region, chlorophyll a's strongest peak is at about 430 nm, whereas the carotenoids' strongest peak is at about 460–465 nm.
- Chlorophyll a shows two peaks (one in the blue, one in the red), whereas the carotenoids show three peaks, all in the blue region.
Both absorb in the blue (400-475 nm) and little green (525-600 nm); chlorophyll a also absorbs in the red (~660 nm), peaks at ~430 nm blue, whereas carotenoids peak at ~460 nm blue and have no red peak.
Background Concept
Each photosynthetic pigment absorbs light most strongly at particular wavelengths, and this is shown by its absorption spectrum (percentage absorption plotted against wavelength). The shape of the spectrum is determined by the pigment's molecular structure:
- Chlorophylls (a and b) have a porphyrin head with a central Mg²⁺ and absorb strongly in the blue (~430 nm) and red (~660 nm) regions, with a gap in the green.
- Carotenoids (β-carotene and xanthophyll) are long isoprenoid chains with conjugated double bonds; they absorb mainly in the blue region (400–500 nm) and appear yellow / orange because they transmit the longer wavelengths.
The combined absorption of all leaf pigments covers most of the visible spectrum, which is why leaves look green (the wavelengths they do not absorb are reflected / transmitted).
Understanding the Question
Fig. 3.2 shows the absorption spectra of chlorophyll a (solid line), chlorophyll b (dash-dot line) and carotenoids (dotted line). This question asks you to compare just chlorophyll a with the carotenoids — similarities and differences. The mark scheme allows up to two similarity points and up to three difference points, for a total of four marks.
Approach
Read each curve carefully:
- Note the wavelengths at which both curves are above zero.
- Note the position(s) of the peak(s) of each curve.
- Note any wavelength ranges where one curve is above the other.
Then organise the answer as 'Similarities' followed by 'Differences', picking the strongest, most specific points and quoting wavelength ranges or peak positions.
Step-by-Step Reasoning
- Both curves are well above zero between roughly 400 nm and 500 nm — the blue region. → Similarity 1.
- Both curves fall close to zero between about 525 nm and 600 nm — the green / yellow region — so both pigments absorb very little green / yellow light. → Similarity 2.
- Chlorophyll a has a second prominent peak near 660 nm (red), where the carotenoid curve is essentially zero. → Difference 1.
- Chlorophyll a's strongest blue peak is at about 430 nm; the carotenoids' strongest peak is at about 460–465 nm — they peak at different wavelengths in the blue region. → Difference 2.
- Chlorophyll a has two distinct peaks (blue and red); carotenoids have three peaks, all in the blue / blue-green region. → Difference 3.
- The range of wavelengths absorbed is wider for chlorophyll a than for the carotenoids. → Additional valid difference.
Any four of these clearly stated points — mixing similarities and differences — earn the four marks.
Key Takeaways
- Compare questions need both similarities and differences.
- Always quote the wavelength range (e.g. '400–475 nm') when describing a region of the spectrum.
- The absorption spectrum of a pigment is a fingerprint of its molecular structure.
- Different pigments complement each other: chlorophyll a absorbs where carotenoids do not (red) and vice versa (the 445–525 nm range where carotenoids still absorb but chlorophyll a does not).
Common Mistakes
- Saying 'chlorophyll absorbs more light than carotenoids' without specifying a wavelength range — the answer depends on wavelength.
- Ignoring the red peak of chlorophyll a.
- Confusing absorption spectra with action spectra (action spectra plot the rate of photosynthesis against wavelength, not absorption).
- Using only colour names ('blue', 'red') without the corresponding wavelength range.
Things to Be Careful About
- For each difference, frame it as a comparison (chlorophyll a X / carotenoids Y), not as two unrelated statements.
- Use 'between 400 and 475 nm' rather than just 'blue'.
- For chlorophyll a's red peak, write 'between 600 and 680 nm' or 'red region'; carotenoids essentially do not absorb above about 530 nm.
- Three differences can be drawn from the mark scheme; choosing any three is fine.
In some species of plant, the absorption of light stimulates seed germination.
The absorption of light increases the production of gibberellin in the embryo of a seed.
Describe the role of gibberellin in the germination of a seed.
Answer
- Gibberellin moves from the embryo to the aleurone layer surrounding the endosperm.
- Inside cells of the aleurone layer, gibberellin binds to the GID1 receptor.
- Binding of gibberellin triggers the breakdown of the DELLA repressor protein.
- Degradation of DELLA releases PIF (phytochrome-interacting factor) transcription factors.
- The released PIFs switch on the gene coding for α-amylase.
- α-amylase is secreted into the endosperm where it hydrolyses starch to maltose.
- Maltose is broken down to glucose, providing the embryo with sugars for respiration and growth of the seedling.
Gibberellin moves to the aleurone layer, binds GID1, triggers DELLA breakdown, releases PIFs that switch on α-amylase, which hydrolyses starch to maltose for the embryo's respiration and growth.
Background Concept
Gibberellins (GAs) are a class of plant hormones with multiple roles: stem elongation, breaking dormancy, and (importantly here) mobilising food reserves in germinating cereal seeds. In a barley- or wheat-type seed, the embryo is small and the bulk of the seed is starchy endosperm. The embryo cannot use starch directly, so it must first be hydrolysed to sugars by the enzyme α-amylase.
α-amylase is not stored pre-formed in the aleurone layer; it is synthesised after gibberellin reaches the aleurone. The molecular pathway is now well characterised:
- The gibberellin receptor GID1 sits inside aleurone cells.
- In the absence of gibberellin, DELLA proteins act as repressors, holding back transcription factors called PIFs (phytochrome-interacting factors).
- When gibberellin binds GID1, the DELLA protein is recruited, ubiquitinated and broken down by the proteasome.
- PIFs are freed to enter the nucleus and switch on target genes — including the gene for α-amylase.
- Newly synthesised α-amylase is secreted into the endosperm where it catalyses starch → maltose.
- Maltose → glucose, and the embryo uses this sugar for ATP production (respiration) and as a carbon skeleton for new cells (growth).
Understanding the Question
The stem says that in some plant species light absorption by the seed stimulates gibberellin production in the embryo. You are asked to describe the role of this gibberellin in germination — what gibberellin does after it has been produced. Four marks are available; the mark scheme accepts any four of seven creditable points, so an answer that lists the pathway in order is the safest.
Approach
Outline the pathway in logical order, starting from gibberellin moving out of the embryo and ending with the embryo receiving glucose. Aim to include the modern molecular detail (GID1, DELLA, PIF) as well as the classical end-point (α-amylase, starch → maltose).
Step-by-Step Reasoning
- Gibberellin synthesised in the embryo diffuses to the aleurone layer (a thin layer of living cells just inside the seed coat, surrounding the starchy endosperm).
- Inside aleurone cells, gibberellin binds to its receptor, GID1.
- The gibberellin–GID1 complex recruits DELLA repressor proteins and triggers their breakdown (by the ubiquitin–proteasome system).
- With DELLA removed, PIF transcription factors are no longer held back; they enter the nucleus and bind to promoter regions of target genes.
- One target gene encodes α-amylase. Transcription is switched on, the mRNA is translated, and the enzyme is synthesised.
- α-amylase is secreted from aleurone cells into the starchy endosperm where it hydrolyses starch to maltose.
- Maltose is further broken down to glucose, which is taken up by the embryo and used in respiration (to make ATP) and as building blocks for new cells (growth).
Key Takeaways
- Gibberellin's role in germination is to mobilise stored food: it triggers the synthesis of α-amylase in the aleurone layer.
- The signalling pathway uses the GID1 receptor and the DELLA / PIF repressor system — a classical example of how a hormone can switch on specific genes.
- The embryo does not directly digest the endosperm; the aleurone layer is the intermediary tissue that produces the digestive enzyme.
- The sugars released by this process fuel both respiration and growth of the embryo, allowing the seedling to establish before it has any photosynthetic capacity.
Common Mistakes
- Saying 'gibberellin breaks down starch' — gibberellin does not digest starch directly; it triggers the synthesis of α-amylase, which then digests starch.
- Confusing gibberellin with auxin (auxin promotes elongation growth in shoots; gibberellin promotes germination and stem elongation).
- Omitting the aleurone layer — the answer should specify where gibberellin acts.
- Stating only one or two points when four marks are available — list the steps in the pathway.
- Saying 'gibberellin turns on the amylase gene' with no mention of DELLA / PIF — modern mark schemes expect the molecular detail.
Things to Be Careful About
- Use precise terminology: GID1 (the receptor), DELLA (the repressor), PIF (the transcription factor), α-amylase (the enzyme), aleurone (the tissue).
- Make the sequence of events clear: gibberellin → receptor → DELLA breakdown → PIF release → gene activation → α-amylase → starch → maltose → embryo.
- Spelling: 'aleurone' (not 'alerone'), 'gibberellin' (not 'giberelin'), 'DELLA' (all capitals — it is a protein-motif name), 'amylase' (not 'amalase').
- For four marks, the mark scheme accepts any four creditable points; including more than four shows strong understanding.
The wolf, Canis lupus, lives in North America. Wolves may have a grey or a black coat colour. The colour of an individual wolf depends on the DNA it inherits at the CPD103 gene locus.
- Wolves inherit two copies of CPD103, one from each parent.
- Wolves that inherit one copy of the black form of the CPD103 gene have a black coat.
State the term used to describe:
- an organism that has two copies of each gene ______
- a form of a gene ______
- a form of a gene that gives a phenotypic effect in a heterozygote. ______
Answer
- an organism that has two copies of each gene: diploid
- a form of a gene: allele
- a form of a gene that gives a phenotypic effect in a heterozygote: dominant (allele)
diploid; allele; dominant (allele)
Background Concept
The CPD103 locus in Canis lupus is introduced with the information that each wolf inherits two copies — one from each parent. Three core genetics terms must be defined to set up the rest of the question.
- Diploid — a cell or organism whose cells contain two complete sets of chromosomes, and therefore two copies (alleles) of every autosomal gene. Most somatic cells of mammals are diploid (2n).
- Allele — one of two or more alternative nucleotide sequences (forms) of a gene that occupies the same locus on homologous chromosomes. The CPD103 gene has at least two alleles in the population: one associated with a black coat and one with a grey coat.
- Dominant allele — an allele that is expressed in the phenotype even when only one copy is present (i.e. in the heterozygote). The stem tells us that a single copy of the black allele is enough to produce a black coat, so the black allele is dominant over the grey allele.
Understanding the Question
This is a "state the term" item — three blanks, one mark each. The student simply has to supply the correct vocabulary word that matches the definition printed in the question. No biological reasoning is needed; the definitions are given in the question itself.
Approach
Read each definition, identify the matching term from the standard CIE genetics vocabulary, and write it in. The order of definitions mirrors the order in which the concepts are introduced in any genetics course: ploidy first, then allele, then dominance relationship.
Step-by-Step Reasoning
- "An organism that has two copies of each gene" — this describes ploidy. Because there are two complete sets of chromosomes carrying two copies of every gene, the organism is diploid (2n). A gamete, with one set, is haploid (n).
- "A form of a gene" — the technical term for a variant version of a gene at a particular locus is an allele. Both the black and grey versions of CPD103 are alleles of the same gene.
- "A form of a gene that gives a phenotypic effect in a heterozygote" — the allele whose effect is visible in a heterozygote (one copy) is the dominant allele. A recessive allele is masked in a heterozygote. Because the question explicitly states that one copy of the black allele produces a black coat, the black allele is dominant.
Key Takeaways
- diploid = two sets of chromosomes (two copies of each gene)
- allele = one variant form of a gene
- dominant = expressed in the heterozygote; recessive = only expressed in the homozygote
- These three terms together allow a phenotype to be predicted from a genotype.
Common Mistakes
- Writing "gene" instead of "allele" for the second blank — a gene is the whole locus; an allele is a particular version of it.
- Writing "recessive" for the third blank — the question describes an allele that is expressed in a heterozygote, which is the definition of dominant.
- Writing "phenotype" or "genotype" for the first blank — these are not terms for the number of gene copies.
Things to Be Careful About
- "Dominant" alone is sufficient; "dominant allele" is also accepted but the bare word scores the mark.
- Do not write "heterozygous" or "homozygous" — these describe the genotype of the individual, not the dominance status of the allele.
In addition to producing black coat colour, the protein coded for by the CPD103 gene also defends against infectious lung disease.
Canine distemper virus (CDV) causes serious lung disease in wolves. Wolves that have been previously infected by CDV have antibodies against CDV (anti-CDV antibodies) in their blood.
CDV can be passed from domestic dogs to wolves.
- Domestic dogs are more numerous in the southern part of the area occupied by wolves.
- Domestic dogs are less numerous in the northern part of the area occupied by wolves.
- The relative frequency of black wolves compared to grey wolves increases from the north to the south of the area they occupy.
Explain how natural selection causes this trend in the distribution of black wolves.
Answer
- CDV acts as a selection pressure (on the wolves).
- The allele for black coat gives resistance to CDV, so it gives a selective advantage when CDV (or domestic dogs) is common.
- In the south, more domestic dogs are present, so more CDV is transmitted to wolves and more wolves become infected with CDV.
- Black wolves are more likely to survive than grey wolves in the south (because they resist CDV).
- Surviving black wolves are more likely to breed than grey wolves.
- Black wolves pass on the allele for black coat, increasing the frequency of the black allele in southern populations. (ORA for grey throughout)
CDV selects for the black allele; in the south, more CDV means black wolves survive and breed more successfully, increasing the frequency of the black coat allele.
Background Concept
Natural selection is the differential survival and reproduction of individuals in a population because of differences in their inherited characteristics. The four logical steps are:
- Variation exists in the population — here, wolves have two coat-colour alleles at CPD103 producing grey or black phenotypes.
- A selection pressure acts on that variation — Canine distemper virus (CDV), a lung pathogen spread from domestic dogs, is the selection pressure.
- Individuals with the advantageous phenotype survive better — black wolves, whose CPD103 protein also defends against lung infection, are more likely to survive CDV.
- Survivors reproduce and pass their alleles to the next generation, so the frequency of the advantageous allele increases over generations.
The stem also gives a crucial pleiotropic detail: the same protein that produces black coat colour also defends the lung against CDV. This is a key example of pleiotropy — one gene, multiple phenotypic effects — and it links coat colour directly to disease resistance.
Understanding the Question
The question supplies the observation: black wolves are proportionally more common in the south of the range (where domestic dogs are more numerous and CDV is more common) than in the north. It asks the candidate to explain, by natural selection, why this geographic trend has arisen. The command word "explain" requires both the mechanism and the link to the specific context (north–south gradient, domestic-dog density).
Approach
Write a connected explanation that follows the selection cycle, naming each element in turn: the selection pressure (CDV), the advantageous allele (black), the differential survival in the southern context, the differential reproduction, and the change in allele frequency. The mark scheme insists on the south context being made explicit at least once, and on pairing each survival/reproduction statement with the ORA for grey.
Step-by-Step Reasoning
- Identify the selection pressure. CDV is a virus that causes serious lung disease and is transmissible from domestic dogs to wolves. It kills some wolves and prevents others from reproducing. This is the agent of natural selection.
- Identify the advantageous phenotype. Because the CPD103 protein that produces black coat colour also defends the lung against CDV, black wolves (which carry at least one black allele) have greater resistance to CDV than grey wolves. The black allele therefore confers a selective advantage where CDV is common.
- Establish the spatial context. Domestic dogs are more numerous in the south, so CDV transmission to wolves is higher in the south and lower in the north. The selective pressure is therefore stronger in the south.
- Differential survival. In the south, where CDV is common, black wolves are more likely to survive infection than grey wolves. Grey wolves, lacking the protective CPD103 variant, are more likely to die. (This is the ORA pair the mark scheme requires.)
- Differential reproduction. The surviving black wolves are more likely to reach reproductive age and produce offspring than the grey wolves that died. (Again, ORA.)
- Change in allele frequency. The black wolves pass the black CPD103 allele to their offspring, so the frequency of the black allele — and hence the proportion of black wolves — increases in the southern population. Over generations this produces the observed north-to-south gradient.
The mark scheme asks for any four of these points; an excellent answer covers all six in a logical chain.
Key Takeaways
- Natural selection has four ingredients: variation, selection pressure, differential survival, differential reproduction.
- Pleiotropy can couple an apparently cosmetic trait (coat colour) to a survival trait (disease resistance), making the visible trait a marker of the underlying selective process.
- The intensity of selection varies with environment: stronger selection in CDV-rich south, weaker in CDV-poor north.
Common Mistakes
- Saying that wolves "chose" to be black or that black wolves "adapted" to CDV during their lifetime — natural selection acts on pre-existing heritable variation; individuals do not change their alleles.
- Talking about black wolves being better camouflaged or warmer — the question gives a different mechanism (the same protein defends against CDV); camouflage/temperature arguments are not credited.
- Omitting the south context — the mark scheme says "context must be established at least once"; a generic answer about selection without placing it in the southern range loses marks.
- Confusing survival with reproduction. Selection requires both differential survival AND differential reproductive success to change allele frequency.
Things to Be Careful About
- Use the term selection pressure explicitly when naming CDV.
- For the differential-survival and differential-reproduction points, the mark scheme allows the ORA form ("grey wolves more likely to die / fail to breed").
- "Allele" is the precise word; "gene", "DNA" or "characteristic" will not always be credited at the same point — match the mark scheme wording where it matters.
Several different populations of wolves were compared.
Fig. 4.1 shows the relationship between the percentage of wolves in a population that have anti-CDV antibodies in their blood and the percentage of wolves in that population that are black. The line of best fit was calculated after comparing the different populations of wolves.
Fig. 4.1
With reference to Fig. 4.1, state the relationship between the percentage of wolves with anti-CDV antibodies and wolf coat colour, and suggest reasons for this relationship.
Answer
Relationship (read from Fig. 4.1): there is a positive (linear) correlation — as the percentage of wolves with anti-CDV antibodies increases, the percentage of black wolves in the population also increases.
Suggested reasons:
- Wolves that survive an infection with CDV develop and retain anti-CDV antibodies, so antibody prevalence is a measure of how much CDV the population has been exposed to.
- A high percentage of wolves with antibodies indicates a population that has experienced a high level of CDV infection.
- In populations with high CDV exposure, grey wolves (which lack the protective black-coat variant of the CPD103 protein) are more likely to have died from the disease, so the surviving population has a higher proportion of black wolves.
- The black allele of CPD103 produces a protein that both gives the black coat colour and defends against CDV infection, so black wolves are more likely to survive CDV and remain in the population.
Positive correlation between % with anti-CDV antibodies and % of black wolves; because antibody prevalence reflects past CDV exposure, and black wolves (whose CPD103 protein resists CDV) survive CDV better than grey wolves.
Background Concept
Antibodies as a record of past infection. When a vertebrate recovers from a viral infection, memory B-lymphocytes continue to produce specific antibodies against that virus for months or years. The presence of anti-CDV antibodies in a wolf's blood is therefore evidence that the wolf was once infected with — and survived — CDV. The proportion of a population carrying those antibodies is a measure of how much CDV the population has been exposed to over recent history.
Pleiotropy revisited. As established in part (b), the same CPD103 protein that produces black coat colour also defends the lung against CDV. So the visible trait (black coat) is a marker for the disease-resistance genotype, and differential mortality from CDV reshapes the phenotypic composition of the population.
Correlation and causation. A positive correlation between two variables does not prove that one causes the other, but in this case a clear biological mechanism (differential survival of black vs. grey wolves in CDV-rich populations) links the two. The line of best fit summarises the trend across several populations.
Understanding the Question
The question has two parts. First, the candidate must state the relationship shown by the line of best fit in Fig. 4.1 — its direction and form. Second, the candidate must suggest reasons for that relationship, using biological reasoning grounded in the information given earlier in the question. There are four marks: one for the relationship and three for the reasons.
Approach
- Read the graph. Identify the axes, the direction of the line, and the form (linear, positive). Describe the trend in plain language.
- Bridge to biology. Connect antibody prevalence → past CDV exposure → differential mortality of grey wolves → shift in the proportion of black wolves that survive.
- Use the pleiotropy from part (b). The same protein that gives black coat colour defends against CDV; this is the proximate cause of the differential mortality.
Step-by-Step Reasoning
- State the relationship from the graph. The line of best fit on Fig. 4.1 rises from the origin towards the top-right corner: as the percentage of wolves with anti-CDV antibodies increases, the percentage of black wolves in the population also increases. The relationship is a positive (linear) correlation. Award 1 mark.
- Antibodies indicate past CDV exposure. Wolves that have been infected with CDV and survived will have anti-CDV antibodies in their blood. A high percentage of the population with these antibodies therefore signals that the population has experienced a high level of CDV infection. Award 1 mark.
- Differential mortality. In populations where CDV has been common, the grey wolves (which lack the protective black variant of CPD103) are more likely to have died from the disease. The black wolves, with the pleiotropic defence, are more likely to have survived. The surviving population therefore contains a higher proportion of black wolves. Award 1 mark.
- Link to coat-colour gene. The CPD103 allele that gives the black coat produces a protein that also defends against CDV. Black wolves are therefore more likely to survive CDV infection and to be present in the population when antibody prevalence is measured. Award 1 mark.
- (Optional AVP) The data are population averages across many populations; on a finer scale other factors (e.g. migration) could modify the trend, but the dominant explanation is differential survival under CDV pressure.
Key Takeaways
- A positive correlation between two variables can be explained by a shared underlying cause (here, CDV pressure) acting on one of the variables (mortality of grey wolves), with the other (antibody prevalence) being a marker of the cause's intensity.
- Antibody prevalence is a retrospective measure of pathogen exposure in a population.
- The same line of reasoning that explained the spatial gradient in part (b) — pleiotropic defence, differential survival, change in allele/phenotype frequency — also explains this graph.
Common Mistakes
- Writing only "positive correlation" with no biological explanation — that scores only the first mark; the other three marks require the reasons.
- Saying antibodies cause black coat colour, or that black coat colour causes antibody production. The two variables are correlated because each is independently linked to CDV exposure/survival.
- Saying the relationship is "directly proportional" without checking the line — the line on the figure does not pass through a defined constant of proportionality, so "positive correlation" is safer than "directly proportional".
- Forgetting to use the pleiotropy link from part (b). The candidate must explicitly state that the black-coat protein also defends against CDV; "black wolves are better" on its own is not enough.
Things to Be Careful About
- The mark scheme requires the candidate to name the positive correlation in their own words (e.g. "as % with antibodies increases, % of black wolves increases") rather than just saying "positive".
- Reasons should each be a complete, biologically explicit point; single-word answers ("resistance") are too vague.
- Read the axes carefully: x = % with anti-CDV antibodies, y = % of black wolves. Reversing the variables in the description will lose the relationship mark.
The endocrine system and the nervous system both coordinate responses in mammals.
Complete Table 5.1 to show the features of three cell-signalling molecules of the endocrine system: antidiuretic hormone (ADH), glucagon and insulin.
Use a tick () if the molecule has the feature and a cross () if the molecule does not have the feature.
Put a tick () or a cross () in every box.
Table 5.1
| feature | ADH | glucagon | insulin |
|---|---|---|---|
| binds to receptors on cell surface membranes | |||
| results in molecules moving from cells into the blood | |||
| is secreted as a result of detection by osmoreceptors |
Answer
| feature | ADH | glucagon | insulin |
|---|---|---|---|
| binds to receptors on cell surface membranes | |||
| results in molecules moving from cells into the blood | |||
| is secreted as a result of detection by osmoreceptors |
See working
Background Concept
The endocrine system uses chemical messengers called hormones, released into the blood by glandular tissue, to coordinate activity in target cells elsewhere in the body. The three hormones tested here — ADH, glucagon and insulin — are all small proteins or polypeptides. Because they are water-soluble they cannot diffuse across the phospholipid bilayer of a cell-surface membrane; instead they bind to receptors on the outer surface of their target cells, triggering an intracellular second-messenger cascade (e.g. the cAMP pathway for glucagon).
• ADH (antidiuretic hormone, also called vasopressin) is synthesised in the hypothalamus and released from the posterior pituitary. It increases the permeability of the distal convoluted tubule and collecting duct to water by promoting the insertion of aquaporins into the apical membrane, so more water is reabsorbed from the filtrate back into the blood. This dilutes the blood and raises its water potential back towards normal.
• Glucagon is secreted by the α cells of the islets of Langerhans in the pancreas in response to low blood glucose. It stimulates glycogenolysis (breakdown of glycogen to glucose) and gluconeogenesis (synthesis of new glucose from non-carbohydrate sources) in liver cells; the glucose produced is released into the blood, raising blood glucose concentration.
• Insulin is secreted by the β cells of the islets of Langerhans in response to high blood glucose. It stimulates the uptake of glucose from the blood by muscle and adipose cells (via GLUT4 transporters) and the conversion of glucose to glycogen (glycogenesis) and to fat (lipogenesis). Insulin therefore moves glucose out of the blood and into cells — it does not move molecules out of cells into the blood.
The osmoreceptors in the hypothalamus detect a fall in blood water potential (an increase in osmolality); only ADH is released in response to their stimulation. Glucagon and insulin are released in response to changes in blood glucose concentration detected by the α and β cells of the pancreatic islets themselves.
Understanding the Question
This part presents a three-row feature table covering the three hormones and asks the candidate to put a tick or cross in every box. The mark scheme awards one mark per correctly completed row. The question explicitly says "put a tick or cross in every box" — leaving a box blank loses the mark for that row even if the other entries are correct.
Approach
For each row, decide what the feature really means in the context of the three molecules:
• "binds to receptors on cell surface membranes" — applies to any water-soluble hormone that cannot cross the membrane. All three are peptide hormones, so all three tick.
• "results in molecules moving from cells into the blood" — apply to each hormone's action. ADH makes the body reabsorb more water (water moves from filtrate into blood); glucagon makes liver cells release glucose (glucose moves out of cells into blood). Insulin does the OPPOSITE — it makes cells take up glucose from the blood — so insulin does not result in molecules leaving cells for the blood.
• "is secreted as a result of detection by osmoreceptors" — only ADH is released in response to osmoreceptor stimulation. Glucagon and insulin respond to blood glucose concentration.
Step-by-Step Reasoning
Row 1 — cell-surface receptors: ADH, glucagon and insulin are all peptide hormones. Because they are hydrophilic they cannot cross the plasma membrane directly, so they bind to receptors on the OUTER surface of the cell-surface membrane of their target cells. All three boxes get a tick (✓, ✓, ✓).
Row 2 — molecules moving from cells into blood:
- ADH increases water reabsorption in the collecting duct, so water leaves the cells/tissue and enters the blood. ✓
- Glucagon triggers glycogenolysis and gluconeogenesis in liver cells, releasing glucose from the cells into the blood. ✓
- Insulin has the OPPOSITE effect — it promotes glucose uptake by cells and glycogenesis, so molecules are moving from blood into cells, not the other way. ✗
Row 3 — secretion triggered by osmoreceptors:
- Osmoreceptors in the hypothalamus detect raised blood osmolality (low water potential); they signal the posterior pituitary to release ADH. ✓
- Glucagon secretion is triggered by low blood glucose detected by α cells in the islets of Langerhans — not by osmoreceptors. ✗
- Insulin secretion is triggered by high blood glucose detected by β cells in the islets of Langerhans — not by osmoreceptors. ✗
Key Takeaways
• All three hormones (ADH, glucagon, insulin) are peptide/protein hormones and therefore bind to cell-surface receptors.
• The chemical nature of a hormone (hydrophilic vs hydrophobic) determines whether it acts at a cell-surface receptor (peptide hormones) or an intracellular receptor (steroid/thyroid hormones).
• The actions of ADH and glucagon cause substances to leave cells/filtrate and enter the blood, while insulin causes substances to leave the blood and enter cells.
• The stimulus for secretion is specific to each hormone's homeostatic role: ADH → osmoreceptors; insulin/glucagon → blood glucose concentration.
Common Mistakes
• Ticking insulin in row 2 because students confuse the direction of glucose movement. Insulin promotes glucose UPTAKE from blood into cells — it does not move molecules out of cells into the blood.
• Ticking glucagon in row 3 because students forget that glucagon responds to glucose, not osmolality.
• Crossing out ADH in row 1 because ADH is sometimes thought of as "going into the cell" — in fact ADH binds to V2 receptors on the basolateral membrane of collecting-duct cells and triggers an intracellular cAMP cascade; it never enters the cell.
Things to Be Careful About
• Use the EXACT chemical nature of each hormone (peptide vs steroid) to deduce whether it acts at a cell-surface or intracellular receptor — this is a transferrable skill that recurs across the syllabus.
• The "osmoreceptor" stimulus is unique to ADH (and to thirst) in the endocrine system tested here; do not confuse it with the glucose-detection role of the pancreatic islets.
• The question states "put a tick or cross in EVERY box" — leaving a box blank will lose the mark for that row even if the other entries in the row are correct.
The endocrine system has a slower transmission speed than the nervous system.
Describe other ways in which the endocrine system and the nervous system differ.
Answer
Any four of:
- The nervous system uses impulses (action potentials) and neurotransmitters, while the endocrine system uses hormones.
- Nervous signals are electrical, while endocrine signals are chemical.
- Nervous signals travel along neurones, while endocrine signals are carried in the blood.
- The nervous system has specific / localised effects on particular target cells, while the endocrine system can have widespread effects on many target cells.
- The effects of the nervous system are short-lived, while the effects of the endocrine system are long-lasting.
See working
Background Concept
Mammals coordinate their internal activities and their responses to the environment using two principal communication systems: the nervous system and the endocrine system. Both are ultimately under the control of the hypothalamus, which acts as the bridge between them. The two systems differ fundamentally in:
• Nature of the signal — the nervous system uses rapid, transient changes in the membrane potential of neurones (action potentials) and releases neurotransmitter into synapses. The endocrine system releases hormones into the blood, where they persist until broken down or taken up by target cells.
• Pathway of transmission — nervous signals travel along specific anatomical routes (axons), allowing very precise targeting. Hormones are released into the general circulation and can reach almost every cell in the body, but only those with the appropriate receptor respond.
• Duration of the effect — neurotransmitter is rapidly broken down or taken back up, so nervous effects are brief (milliseconds to seconds). Hormones persist in the blood for longer (seconds to hours or days), giving sustained responses.
• Specificity of the target — the wiring of neurones means that the effect is highly localised (a single neuromuscular junction, a single gland). Hormones can act on many cells simultaneously (e.g. insulin acts on every body cell), giving a more diffuse but coordinated response.
Understanding the Question
The question stem has already told the candidate that the endocrine system has a slower transmission speed than the nervous system. The candidate is asked to describe other ways in which the two systems differ — i.e. other than the speed of transmission. The mark scheme accepts any four valid contrasting pairs from a list of six.
Approach
For each potential difference, state the feature of the nervous system and the corresponding feature of the endocrine system, using comparative phrasing such as "X, whereas Y" or "X in the nervous system but Y in the endocrine system". The mark scheme is a "matching pair" list — each pair counts as one mark, and a mark requires BOTH halves of the pair.
Step-by-Step Reasoning
-
Nature of the signal — Nervous system: electrical impulses (action potentials) along the axon, with chemical neurotransmitters across the synapse. Endocrine system: chemical hormones released into the blood. (Mark scheme points 1 and 2.)
-
Pathway — Nervous system: along neurones. Endocrine system: in the blood. (Mark scheme point 3.)
-
Specificity of target — Nervous system: specific / localised — the signal only reaches the cells wired to the active neurone. Endocrine system: can be widespread — a hormone released into the blood can act on any cell with the appropriate receptor anywhere in the body. (Mark scheme point 4.)
-
Duration of effect — Nervous system: short-lived (neurotransmitter is broken down or reabsorbed within milliseconds). Endocrine system: long-lasting (hormones persist in the blood until metabolised by the liver or kidneys). (Mark scheme point 6.)
-
Speed of response — Nervous system: fast (already given in the question, so do NOT use this if asked for "other" differences; mark scheme point 5 is also covered by the question stem).
Key Takeaways
• The two systems differ in the nature of the signal, the pathway, the specificity of the target, the duration of the effect, and the speed — the last is given in the question.
• Always present differences as a MATCHED PAIR with both halves stated; giving only one half of a pair does not earn the mark.
• The nervous system is best suited to rapid, precise, short-lived actions (e.g. withdrawal reflex, posture); the endocrine system is best suited to slower, sustained, body-wide regulation (e.g. glucose homeostasis, water balance, growth, reproduction).
Common Mistakes
• Stating only ONE half of a comparison (e.g. "the nervous system is electrical") without the corresponding half for the endocrine system — does not earn the mark.
• Repeating the speed difference that has been given in the question stem — this is what the question explicitly says NOT to do ("other ways").
• Confusing the ENDOCRINE system with the AUTONOMIC nervous system (which is part of the nervous system) — many autonomic effects are slow, diffuse and long-lasting, but they are still nervous, not endocrine.
• Vague statements like "they use different chemicals" or "they are located in different places" — these do not earn marks because they are not specific contrasts.
Things to Be Careful About
• Use precise CIE terminology: "action potential" or "nerve impulse", not just "signal"; "hormone", not just "chemical".
• Make the comparison explicit: the nervous system DOES X, while the endocrine system DOES Y.
• The mark scheme accepts any four valid pairs — pick the four you can express most clearly and accurately, not the four that are listed first.
The endocrine system and the nervous system can affect muscle function.
Fig. 5.1 shows a transmission electron micrograph of a longitudinal section of striated muscle tissue that is in a relaxed state.
Fig. 5.1
Answer
C
C
Background Concept
A striated (skeletal) muscle fibre is divided longitudinally into repeating contractile units called sarcomeres, the basic functional unit of contraction. Each sarcomere is bounded at each end by a Z-disc (also called a Z-line), a protein disc to which the thin actin filaments are anchored. Inside each sarcomere, the A-band is the full length of the thick myosin filaments, the I-band is the region containing only thin actin filaments, and the H-zone is the central part of the A-band containing only myosin (no actin overlap).
The sarcomere is therefore defined as the region from one Z-disc to the next Z-disc, and its length is typically about 2–2.5 µm in resting human skeletal muscle.
Understanding the Question
A TEM of striated muscle is shown with four labels (B, C, D and E) marking different horizontal regions. The candidate must identify which letter spans the length of a sarcomere. The mark scheme credits only the letter C.
Approach
Recall the definition: a sarcomere runs from one Z-disc to the next. The brackets labelled C in the micrograph are the ones that span from one Z-disc to the next — that is, the full length of one sarcomere. Therefore the answer is C.
Step-by-Step Reasoning
Looking at the brackets in the micrograph:
- B spans a region centred on a Z-disc but does not extend from one Z-disc to the next.
- C clearly runs from one Z-disc across the entire A-band to the next Z-disc — this is the standard convention for marking the length of a sarcomere.
- D spans only the A-band.
- E spans only the H-zone inside the A-band.
So the letter that indicates the length of a sarcomere is C.
Key Takeaways
• A sarcomere is the unit of contraction, bounded by two Z-discs.
• On a TEM, the Z-disc appears as a dark vertical line interrupting the regular banding pattern of striated muscle.
• Being able to identify the major regions of a sarcomere (Z-disc, I-band, A-band, H-zone) on a micrograph is a recurring practical skill.
Common Mistakes
• Choosing D (the A-band) or B (the I-band) instead of C — students often confuse the A-band or I-band with the sarcomere itself. The sarcomere is bigger than the A-band (it includes the I-band at each end) and bigger than the I-band (it includes the A-band between the two I-bands).
• Choosing E (the H-zone) — this is the smallest, central region and is not the sarcomere.
Things to Be Careful About
• Memorise the spatial relationship: Z-disc → I-band (only actin) → A-band (myosin, with H-zone in the middle) → I-band (only actin) → Z-disc.
• The sarcomere SHORTENS during contraction (because actin slides past myosin), but the A-band stays roughly the same length, the I-band shortens, and the H-zone shortens — this is the basis of the sliding filament model tested in part (c)(iii).
Answer
B
B
Background Concept
Within a sarcomere, the thick filaments (myosin) occupy the A-band, while the thin filaments (actin) are anchored at the Z-disc and extend inwards. Because the actin filaments reach part-way into the A-band from each end, the ends of the A-band contain a region where actin and myosin filaments overlap. This overlap region is where cross-bridges can form between myosin heads and actin binding sites — the only place in the sarcomere where force can be generated.
The remaining regions of the A-band (the H-zone in the middle) and the I-band at each end do NOT contain overlap: the H-zone has only myosin, the I-band has only actin.
Understanding the Question
The candidate must identify which letter on the micrograph marks a region where actin and myosin overlap. The mark scheme credits only the letter B.
Approach
Look at where the brackets are drawn:
- B spans a region that includes the I-band/outer A-band zone of overlap (the part of the A-band where actin and myosin are alongside each other).
- C spans the full sarcomere.
- D spans the full A-band (which includes both overlap and the H-zone).
- E spans only the H-zone (no overlap).
The label that corresponds to the region of overlap is B.
Step-by-Step Reasoning
The region of overlap is the zone in each half of the A-band where the actin filaments reach inwards from the Z-disc and lie alongside the myosin filaments. In the micrograph this appears as a relatively dark band because both filament types are present and the section is dense. The brackets labelled B in the figure span exactly this region — from the Z-disc inwards to the start of the H-zone (where myosin no longer has actin alongside it). Therefore the region of actin–myosin overlap is labelled B.
Key Takeaways
• Cross-bridges can only form where actin and myosin overlap.
• The I-band is the region of ONLY actin (no overlap), the H-zone is the region of ONLY myosin (no overlap), and the ends of the A-band are the region of overlap.
• During contraction, the overlap region GROWS in size (more actin slides into the A-band), the I-band SHRINKS, and the H-zone SHRINKS — but the A-band itself does not change in length.
Common Mistakes
• Choosing D (the A-band) — the A-band includes both the overlap region AND the H-zone, so it is not exclusively the overlap region.
• Choosing E (the H-zone) — the H-zone is the region with no actin and therefore no overlap.
• Choosing C (the whole sarcomere) — the sarcomere includes the I-bands at each end, where there is also no overlap.
Things to Be Careful About
• Be precise about what each label spans — the question is testing the candidate's ability to read a TEM and identify a specific sub-region of a band, not just to identify a whole band.
• Recall that cross-bridge formation (and therefore force generation) can only occur in the overlap region.
Describe and explain how the region labelled D on Fig. 5.1 changes during muscle contraction.
Answer
- D (the A-band) shortens / contracts / decreases in length.
- Calcium ions () bind to troponin.
- Tropomyosin moves / shifts position, exposing binding sites on the actin filaments.
- Myosin heads bind to actin, forming myosin–actin cross-bridges.
- The myosin head performs a power stroke, pulling the actin filament.
- More actin enters / overlaps with the A-band, so there is more overlap between actin and myosin.
See working
Background Concept
The sliding filament model of muscle contraction states that the sarcomere shortens because the thin (actin) filaments slide INWARDS over the thick (myosin) filaments, pulled by the cyclical action of the myosin cross-bridges. The filaments themselves do NOT change in length — they merely slide past one another.
Key players in the mechanism:
• Actin — thin filament; carries the binding site for the myosin head. In a resting muscle the binding site is covered by the regulatory protein tropomyosin, which is held in place by troponin.
• Myosin — thick filament; each myosin molecule has a head that can bind ATP, hydrolyse it, bind to actin, and perform a "power stroke" that pulls the actin filament.
• Calcium ions () — released from the sarcoplasmic reticulum when the muscle is stimulated (via an action potential travelling down the T-tubules and depolarising the sarcoplasmic reticulum). The binds to troponin, causing troponin to change shape, which in turn moves tropomyosin off the myosin-binding site on actin.
• ATP — required both for the power stroke (ADP and Pi are released) and for detaching the myosin head from actin after the stroke. Without ATP, the cross-bridge cannot release (this is why rigor mortis occurs after death).
In a relaxed muscle: tropomyosin covers the binding sites on actin, so myosin cannot bind, and no cross-bridges form. In a contracted muscle: has exposed the binding sites, cross-bridges have cycled repeatedly, and the actin filaments have been pulled inwards, increasing their overlap with the myosin filaments.
Understanding the Question
The question asks the candidate to describe AND explain how the region labelled D (the A-band) changes during muscle contraction. "Describe" requires the visible/measurable change; "explain" requires the underlying molecular mechanism. The mark scheme awards one mark for the description (D shortens) and three further marks for the molecular explanation, in any order.
Approach
- State the change in D (A-band) first.
- Then walk through the molecular sequence: release → binding to troponin → tropomyosin moves → cross-bridge formation → power stroke → increased overlap.
- Connect the molecular events to the visible change — more actin overlaps with the A-band, so the A-band appears to shorten.
Step-by-Step Reasoning
Description (1 mark):
D — the A-band — shortens (contracts / decreases in length) during muscle contraction. The CIE mark scheme pairs this with the explanation that "more actin enters / overlaps with the A band".
Explanation (3 marks from the following points):
-
When the muscle is stimulated, is released from the sarcoplasmic reticulum into the sarcoplasm. The binds to troponin on the actin filament.
-
Troponin changes shape and pulls tropomyosin away from the myosin-binding site on the actin filament, exposing it.
-
The energised myosin head (with ADP and Pi still bound from the previous hydrolysis of ATP) can now bind to the exposed site, forming a myosin–actin cross-bridge.
-
The myosin head performs a power stroke — it pivots, releasing ADP and Pi, and pulls the actin filament towards the centre of the sarcomere (towards the M-line). A new ATP molecule then binds to the myosin head, causing it to detach from actin; hydrolysis of this ATP re-cocks the head for the next cycle.
-
Repeated cycles pull the actin filaments further into the A-band from each Z-disc, so more actin overlaps with the A-band (and the H-zone shrinks and disappears). This increased overlap is what the CIE mark scheme describes as the A-band "shortening".
Key Takeaways
• The sliding filament model: actin slides over myosin, pulled by the cyclical formation and breakage of cross-bridges, powered by ATP hydrolysis.
• The role of : it is the trigger that switches the system ON by moving tropomyosin off the binding site.
• The role of ATP: it is needed both for the power stroke (energy) and for cross-bridge detachment.
• Visible change during contraction: sarcomere shortens, I-bands shorten, H-zone shortens, overlap region grows.
Common Mistakes
• Saying "D shortens because the myosin contracts" or "because the muscle gets shorter" — this is not a mechanistic explanation; the myosin does NOT contract, it pivots.
• Saying "calcium is needed for contraction" without specifying that it binds to troponin and moves tropomyosin.
• Forgetting to mention ATP, or saying that ATP is "used up" during the power stroke (it is hydrolysed, and is also needed to detach the myosin head).
• Confusing the roles of troponin and tropomyosin (troponin binds the calcium; tropomyosin covers the binding site on actin).
• Stating that the A-band gets longer (it does not — the A-band length is fixed by the length of the myosin filaments; what changes is the position of the actin filaments within it).
Things to Be Careful About
• Use the precise terms: "myosin head", "power stroke", "cross-bridge", "tropomyosin", "troponin".
• Show the SEQUENCE of events clearly — release precedes cross-bridge formation, which precedes the power stroke.
• Connect the molecular mechanism explicitly to the visible change in D — say that more actin overlaps with the myosin in the A-band, not just that "contraction happens".
The distribution of the large blue butterfly, Phengaris arion, extends across Europe and Asia. It is assessed by the International Union for Conservation of Nature (IUCN) on the Red List™ as ‘Near Threatened’ globally and ‘Endangered’ in Europe.
In Europe, P. arion became extinct in the Netherlands in 1964 and in the United Kingdom in 1979.
Fig. 6.1 lists the conservation status categories in the IUCN Red List™.
Fig. 6.1
Fig. 6.2 shows P. arion.
Fig. 6.2
Answer
- The Red List identifies, classifies and prioritises the species most at risk of extinction, so that limited conservation resources can be directed where they are needed.
- It provides reliable, standardised data that governments, scientists, zoos and industry can use to inform policy and management decisions.
- It enables specific conservation actions (such as habitat restoration, captive breeding, legal protection, re-introduction programmes) to be put in place to protect threatened species.
See answer.
Background Concept
The IUCN (International Union for Conservation of Nature) maintains the Red List™, a global inventory that classifies species into categories of extinction risk (Extinct, Extinct in the Wild, Critically Endangered, Endangered, Vulnerable, Near Threatened, Least Concern). The categories are based on quantitative criteria (population trends, range size, number of mature individuals) and are reviewed periodically. The Red List is not a law, but it is a tool that informs international treaties (such as CITES), national legislation (e.g. wildlife protection acts) and conservation funding decisions. By providing a common, evidence-based language of threat, it allows different countries and organisations to prioritise effort consistently.
Understanding the Question
Part (a)(i) asks you to explain, not just describe. "Explain how … help to conserve" means you must say what the assessment does, and why that action leads to better conservation outcomes. Three marks are available, so you need three distinct points — most candidates give a list of benefits.
Approach
Think of the Red List as a triage system. What does triage do? It sorts patients by urgency, directs resources to the worst-affected, and triggers specific treatments. Translate this to species: the Red List identifies who is most at risk, channels effort and money towards them, and triggers appropriate protective action.
Step-by-Step Reasoning
-
Identification and prioritisation. The Red List uses standard criteria to identify which species are most at risk. This allows conservationists to focus limited time, money and effort on those species rather than spreading resources thinly. Without such a framework, decisions would be ad hoc.
-
Information and advice. The Red List produces data and assessments that are widely accessible. Governments use them to draft legislation (banning hunting, protecting habitats), scientists use them to choose research priorities, zoos use them to choose which species to breed in captivity, and industry uses them for environmental impact assessments. The list therefore influences policy at many levels.
-
Triggering specific conservation actions. Once a species is categorised as threatened, concrete steps can follow — legal protection, habitat restoration, captive breeding, re-introduction programmes, international trade restrictions through CITES. In the case of Phengaris arion, the listing contributed to the reintroduction programme in the United Kingdom.
Key Takeaways
- The IUCN Red List is a prioritisation and information tool, not a law itself.
- It works by identifying threatened species, providing data to decision-makers, and triggering specific conservation actions.
- Three marks typically map to three distinct functions: prioritisation, data provision, and action.
Common Mistakes
- Saying only that it "tells us which animals are in danger" without explaining how this leads to conservation.
- Confusing the IUCN (which produces the list) with CITES (which regulates trade in listed species).
- Writing a list of reasons to conserve biodiversity in general, rather than explaining what the Red List specifically does.
Things to Be Careful About
- Use the command word correctly: "explain" requires cause-and-effect, not just a list.
- Make each point a distinct function of the Red List, not three different wordings of the same idea.
- It is fine to use a named example (such as the reintroduction of P. arion) to illustrate a point.
With reference to Fig. 6.1 and the IUCN assessments for P. arion, suggest how the abundance of the butterfly differs across its distribution.
Answer
- P. arion is classified as Near Threatened (NT) globally (across Asia and the rest of its world range) but Endangered (EN) in Europe, indicating a higher local extinction risk in Europe.
- The butterfly is therefore likely to be less abundant in Europe (where it has already been lost from the Netherlands and the United Kingdom) than across the wider Asian part of its range, where populations remain more secure.
Less abundant in Europe (Endangered) than in the wider Asian range (Near Threatened).
Background Concept
IUCN categories are a relative measure of extinction risk, not direct counts of individuals. A species that is Endangered (EN) is at a much higher risk of extinction than one that is Near Threatened (NT) — and this typically reflects a smaller, declining or more fragmented population. Reading the categories from Fig. 6.1 (which has an arrow showing "increasing risk of extinction" from Least Concern up to Extinct), a higher category implies fewer individuals and/or a more precarious population status.
Understanding the Question
The question gives you two IUCN assessments: globally Near Threatened, but Endangered in Europe. It asks you to compare the abundance in Europe with the abundance elsewhere. You must refer to Fig. 6.1 (so that the comparison is explicit) and use the regional split given in the stem. Two marks are available, and the mark scheme insists the geographic context (Europe vs Asia / global) is stated.
Approach
Read the categories off Fig. 6.1, then translate the difference in category into a difference in abundance. Because EN sits several rungs above NT on the "increasing risk of extinction" arrow, populations in Europe must be smaller / more threatened than those across the rest of the range (most of which is in Asia).
Step-by-Step Reasoning
-
Locate the two categories on Fig. 6.1. Near Threatened (NT) sits near the bottom of the arrow; Endangered (EN) is much higher up the arrow, indicating a much greater risk of extinction. Therefore the European population is at considerably more risk than the rest of the global population.
-
Translate category into abundance. A higher extinction-risk category generally means a smaller population size and/or a declining or more fragmented population. So P. arion is less abundant in Europe than in the rest of its range. The historical information (extinct in the Netherlands since 1964, extinct in the UK since 1979) supports this directly — Europe has already lost populations.
Key Takeaways
- A more threatened IUCN category implies a smaller and/or declining population.
- A species can be globally secure but regionally imperilled — region matters.
- Always state the geographic context when comparing categories, otherwise the point is incomplete.
Common Mistakes
- Saying the butterfly is "more common in Asia" without naming the IUCN category in Europe (the mark scheme requires the EN context).
- Confusing Near Threatened with Endangered on Fig. 6.1.
- Treating the two categories as if they apply to two different species rather than to the same species in different regions.
Things to Be Careful About
- The question requires reference to Fig. 6.1 and the IUCN assessments, so mention NT and EN by name.
- "Suggest" means you are inferring abundance from risk category — that inference should be made explicit.
P. arion has been successfully re-introduced in the United Kingdom at 12 sites. These sites were restored to flower-rich grassland.
The conservation management actions designed for P. arion also resulted in the re-establishment or increase of other species at the restored sites. These included 12 species of flowering plant, 8 other butterfly species and 4 species of other insects.
Use the information given to suggest why P. arion went extinct in the United Kingdom in 1979.
Answer
- The flower-rich grassland habitat that P. arion depends on was degraded, changed or lost in the United Kingdom.
- This was caused by changes in farming practices (such as more intensive agriculture or loss of traditional grazing) and/or development of land for other uses, leaving the butterflies without their required food plants and breeding habitat.
Habitat degradation/loss caused by agricultural change or development, removing the food plants the butterfly needed.
Background Concept
Most insect extinctions are driven by habitat change rather than direct persecution. For specialist butterflies, survival depends on the presence of specific larval food plants, adult nectar sources and (in some species) very particular microhabitats such as ant nests. When grassland is ploughed, sprayed with herbicide, fertilised, abandoned or built on, the wild flowers and the ecological relationships that depend on them collapse.
Understanding the Question
The stem tells you that successful reintroduction only worked after the UK sites were restored to flower-rich grassland and that the same restoration also brought back 12 species of flowering plants, 8 other butterflies and 4 other insects. The implication is that the original UK habitat had lost those flowers. Two marks are available; you must say both what was lost (habitat/food plants) and what caused it (farming change or development).
Approach
Work backwards from the restoration. If reintroducing the butterfly required flower-rich grassland, then the absence of flower-rich grassland was the problem. The most plausible cause across the British countryside in the twentieth century was agricultural intensification (ploughing of species-rich meadows, herbicide use, loss of traditional grazing) plus some urban/industrial development.
Step-by-Step Reasoning
-
Habitat loss / degradation. The butterfly depends on flower-rich grassland. If that habitat is lost or degraded, the species cannot complete its life cycle. This is the proximate cause.
-
Cause of the habitat change. In Britain, the most likely driver of grassland loss is changes in farming — intensification, ploughing of meadows, herbicide use, loss of grazing on traditionally managed downland — together with development (housing, roads, industry). The result is that the specific food plants the caterpillars and adult butterflies need are removed.
-
Why the question supplies the reintroduction data. Mentioning that reintroduction needed flower-rich grassland is a deliberate hint that habitat was the missing factor. The fact that 12 other plant species also recovered confirms the wider habitat had been impoverished, not just the butterfly.
Key Takeaways
- Habitat loss is the leading cause of insect declines.
- Restoration must include the specific food plants and habitat structure a species requires.
- Evidence for the cause of extinction is often indirect; here it comes from what the restoration had to add back.
Common Mistakes
- Saying the butterfly was "hunted" or "collected" — there is no evidence of this and the habitat clue points elsewhere.
- Saying only "habitat loss" without identifying the agent (farming/development).
- Saying "climate change" — this is not the most likely cause in 1979 Britain and is not what the stem supports.
Things to Be Careful About
- "Use the information given" means anchor your answer in the stem (flower-rich grassland, restored sites).
- Two marks require two distinct points — habitat change AND its driver.
Answer
- Restoring habitats prevents the extinction of the target endangered species and allows it to continue to survive and reproduce.
- It maintains and increases overall biodiversity — restoring habitat for one species also benefits many co-occurring species (in this case 12 flowering plants, 8 other butterflies and 4 other insects).
- It protects and stabilises food chains and food webs by restoring the ecological interactions and ecosystem services (such as pollination) on which other organisms, including humans, depend.
- It provides aesthetic, recreational and wellbeing benefits to people, supports scientific research and education, and fulfils an ethical/moral responsibility to look after other species.
See answer.
Background Concept
Biodiversity can be conserved for many reasons: ecological (each species plays a role in an ecosystem, contributing to food web stability and ecosystem services such as pollination, nutrient cycling and pest control), economic (ecosystem services have measurable value), aesthetic/recreational (people enjoy nature), scientific (we study species to understand life), ethical (we owe other species a duty of care) and cultural (species can be part of local identity). Habitat restoration is one of the most effective ways to deliver these benefits at once, because one restored site can support many species simultaneously — exactly what is shown by the recovery of plants, other butterflies and insects at the P. arion sites.
Understanding the Question
This is an "outline" question worth four marks. "Outline" means summarise the main points — you do not need to explain at length, but each point must be a distinct benefit. The mark scheme offers eight alternative points, of which any four will score. Aim to cover a spread of reasons (ecological, ethical, human/economic) to show breadth.
Approach
Read the stem for clues: it emphasises that other species also recovered at the restored sites. This points strongly to a benefit about broader biodiversity and ecosystem stability. Then expand into the standard catalogue of reasons to maintain biodiversity and choose the four that fit best.
Step-by-Step Reasoning
-
Direct survival benefit. Restoration prevents the extinction of the target endangered species, allowing it to continue to breed and maintain a viable population.
-
Biodiversity benefit. Restored habitats support many other species simultaneously. The stem gives concrete evidence: 12 plant species, 8 other butterfly species and 4 other insect species also re-established or increased. So restoration boosts overall biodiversity, not just the single target species.
-
Ecosystem benefit. Restored habitats re-establish ecological interactions such as food chains, food webs and ecological relationships. P. arion itself has a remarkable life cycle involving specific ant species, which depends on intact grassland. These interactions underpin ecosystem services such as pollination, which benefit humans as well as wildlife.
-
Human and ethical benefits. Restoration provides aesthetic, recreational and wellbeing value for visitors, supports scientific research and education about endangered species and their ecology, and satisfies an ethical/moral responsibility to look after biodiversity. It can also support local economies through ecotourism and preserve local heritage.
Key Takeaways
- One well-targeted habitat restoration can deliver benefits to many species and to people at once.
- Reasons to maintain biodiversity span ecological, economic, aesthetic, scientific, ethical and cultural categories — a strong answer samples several.
- "Outline" questions reward breadth: distinct points covering different categories.
Common Mistakes
- Repeating the same benefit in different words (e.g. "prevents extinction" and "saves the species" count as one point).
- Confining the answer to the target species and ignoring the wider biodiversity shown in the stem.
- Giving only human-centred reasons (aesthetic, economic) without any ecological reasoning.
Things to Be Careful About
- Use the data in the stem — the recovery of other species is itself a marking point.
- Four marks means four distinct, well-articulated points; do not pad a single point to fill space.
In aerobic respiration, most ATP is produced by oxidative phosphorylation.
Answer
- ATP is hydrolysed to ADP and , releasing energy for cellular processes.
- The reaction is reversible, so ATP can be regenerated (e.g. during respiration) giving a high rate of turnover.
- ATP is a small, soluble molecule so it can readily diffuse / move to wherever energy is needed in the cell.
Hydrolysed to ADP and Pi, releasing energy; reversible/high turnover; small and soluble so diffuses freely in the cell.
Background Concept
ATP (adenosine triphosphate) is a nucleotide derivative consisting of the nitrogenous base adenine, the pentose sugar ribose, and a chain of three phosphate groups. The bonds between the terminal phosphate groups are often described as 'high-energy' (more accurately, they are bonds whose hydrolysis releases a large amount of free energy, ). Removing the terminal phosphate by hydrolysis yields ADP (adenosine diphosphate) and inorganic phosphate (), and this reaction powers almost every energy-requiring process in the cell — from active transport and biosynthesis to cell movement and maintaining body temperature.
For a molecule to act as a universal energy currency it must satisfy several criteria. It must release an intermediate amount of energy (not so much that it is destructive, not so little that it cannot drive reactions), be regenerated easily, and be transportable within the cell.
Understanding the Question
Part (a) is a 3-mark 'outline' question. The command word 'outline' requires a brief description of the relevant features — it does not require deep explanation. The question is restricted to the features of the ATP molecule itself (its structure, chemistry and properties), not to where the energy comes from or how ATP is used.
Approach
The mark scheme offers five possible creditable points. Pick the three that together give the most complete picture: one for the hydrolysis reaction itself, one for its reversibility/regeneration, and one for the physical mobility of the molecule. Always pair the property with its consequence (e.g. 'small/soluble' AND 'so can diffuse') — the mark scheme credits the reasoning, not just the label.
Step-by-Step Reasoning
- Point 1 — Hydrolysis and energy release. ATP is described as an 'energy currency' because the hydrolysis of its terminal phosphoanhydride bond, , releases energy. The energy released is sufficient to drive otherwise unfavourable (endergonic) reactions, often by phosphorylating the substrate.
- Point 2 — Reversibility / regeneration. The same reaction is reversible: ADP and can be re-phosphorylated back to ATP using energy from catabolic processes (respiration, photosynthesis). This 'recyclability' gives ATP a high turnover and means a cell only needs a small pool of ATP at any one moment.
- Point 3 — Small and soluble / mobility. The ATP molecule is small and water-soluble, so it can diffuse through the cytosol and reach all the locations in the cell where energy is needed, including organelles such as mitochondria and chloroplasts (although the inner mitochondrial membrane requires the ATP/ADP translocase).
Other valid points that could earn a mark include: only a small amount of energy is released per hydrolysis (so it is not destructive / wasteful); the adenine portion allows it to be recognised by many different enzymes; it can be made from ADP + , so a constant supply of is not a limiting factor.
Key Takeaways
- ATP is the immediate energy source for most cellular work; the energy is released by hydrolysis of a terminal phosphate bond.
- The hydrolysis reaction is readily reversible, allowing ATP to be continuously recycled.
- Its small, soluble structure allows free movement in the cytoplasm.
Common Mistakes
- Saying only that ATP 'contains energy' — the mark is for stating that hydrolysis releases energy.
- Writing 'ATP has high-energy bonds' without mentioning that these bonds are broken to release energy.
- Describing how ATP is made (respiration) instead of features of the molecule that suit it as a currency.
- Forgetting to link each property to a consequence — e.g. 'small' alone is incomplete; it must be tied to mobility/diffusion.
Things to Be Careful About
- 'Outline' = brief description, not exhaustive explanation. Three well-stated points are sufficient for full marks.
- Acceptable alternative wording (e.g. 'phosphorylated' / 'converted to ADP and Pi' / 'donates a phosphate group') is credited, but the term 'energy currency' is not a substitute for the actual points.
- A common confusion: ATP does not store energy long-term — that role belongs to carbohydrates, lipids and proteins. ATP is an immediate, short-term carrier.
Rotenone is a compound that affects oxidative phosphorylation.
Rotenone disrupts the first carrier in the electron transport chain by stopping the transfer of electrons from this carrier.
Suggest and explain how rotenone reduces the production of ATP and water in aerobic respiration.
Answer
Effect on ATP production
- Rotenone blocks the first carrier in the ETC, so electrons cannot be passed along the chain (electron flow stops).
- With no electron flow, no energy is released to drive the pumping of ions from the matrix into the intermembrane space.
- There is therefore no / a much smaller (proton) gradient across the inner mitochondrial membrane.
- Without the proton gradient, cannot flow back through ATP synthase, so ATP synthesis by oxidative phosphorylation stops / is greatly reduced.
Effect on water production
- Electrons cannot reach the final carrier in the chain, so fewer / no electrons are available to combine with oxygen and at the end of the chain.
- Therefore less / no water is produced as a by-product of oxidative phosphorylation.
Knock-on effect on earlier stages
- Reduced NAD cannot be re-oxidised (its electrons cannot enter the chain), so the supply of falls.
- This slows / stops glycolysis, the link reaction and the Krebs cycle, so substrate-level phosphorylation of ATP also decreases.
Rotenone blocks electron flow at the first carrier, so no H+ are pumped and no proton gradient forms → ATP synthase cannot make ATP and electrons never reach the final carrier to combine with O2 to form water; NAD+ is not regenerated, slowing earlier stages.
Background Concept
Oxidative phosphorylation is the process by which the energy of electron transport is used to phosphorylate ADP to ATP. In the inner mitochondrial membrane are four large protein complexes (I, II, III, IV) plus mobile electron carriers (ubiquinone and cytochrome c). Together these form the electron transport chain (ETC).
The flow of electrons through the chain, from higher-energy carriers to lower-energy ones, releases energy. Complexes I, III and IV use this energy to pump protons () from the matrix into the intermembrane space, creating an electrochemical (proton) gradient. Protons then flow back down this gradient through ATP synthase (Complex V), and the energy of that flow drives the synthesis of ATP from ADP and — this is chemiosmosis.
At the end of the chain, in Complex IV, electrons are donated to oxygen (the terminal electron acceptor), which combines with to form water:
This is why water is produced as a by-product of aerobic respiration. The electrons entering the chain come from reduced coenzymes (NADH and FADH) generated in glycolysis, the link reaction and the Krebs cycle. Re-oxidation of these coenzymes (NADH , FADH FAD) is essential because the cell has only a small pool of each, and they must be recycled for the earlier stages of respiration to continue.
Understanding the Question
The question gives a piece of information: rotenone disrupts the first carrier in the ETC so that it cannot pass electrons on. From this single fact you must reason through every consequence.
- The command word is suggest and explain — a two-step demand. You must state what happens AND why. Each marking point on the scheme is essentially a 'what' followed by a 'why'.
- Two products are explicitly named in the question: ATP and water. The answer should address both, plus the inevitable knock-on effect on the substrate-level stages through the lack of regeneration (this is an additional high-yield point the mark scheme rewards).
- The question is worth 6 marks, so the mark scheme expects around six clearly reasoned points.
Approach
Trace the consequences of the blockage in a logical cascade:
- Block at the first carrier → no electron flow through the ETC. (Direct, mechanical consequence.)
- No electron flow → no energy released to pump . (Cause of the next effect.)
- No pumping → no / smaller proton gradient. (The gradient is what drives ATP synthesis.)
- No proton gradient → cannot flow through ATP synthase → no ATP made by oxidative phosphorylation. (Answers the 'ATP' part of the question.)
- No electrons reach the final carrier (Complex IV) → no electrons to reduce → no / less water formed. (Answers the 'water' part of the question.)
- Reduced NAD cannot be re-oxidised → shortage of → earlier stages (glycolysis, link reaction, Krebs cycle) slow / stop → less ATP from substrate-level phosphorylation too. (Indirect, downstream consequence.)
Aim to deliver these six points in a clear order so the examiner can tick each one.
Step-by-Step Reasoning
Point 1 — Electron flow stops.
Rotenone binds to Complex I (NADH dehydrogenase), the first carrier. Electrons from NADH cannot be transferred on to ubiquinone, so the entire electron-transport chain 'downstream' of this point receives no electrons. The chain is effectively 'broken'.
Point 2 — No energy released.
The energy used to pump protons is released as electrons pass from carrier to carrier and fall to lower energy levels. With no electron flow there is no fall in energy, so no usable energy is released to do the work of pumping.
Point 3 — No / reduced pumping.
Complexes I, III and IV normally pump from the matrix into the intermembrane space. With Complex I inactive, and the rest of the chain not receiving electrons, none of these complexes can pump protons. The concentration in the intermembrane space therefore falls.
Point 4 — No / smaller proton gradient.
A proton gradient requires a high concentration in the intermembrane space relative to the matrix. Without active pumping, the gradient dissipates (any gradient that exists is quickly used up by ATP synthase or by leakage). The proton-motive force that normally drives ATP synthesis is therefore lost.
Point 5 — ATP synthase cannot make ATP (oxidative phosphorylation halts).
normally flows back into the matrix through the channel in ATP synthase, and the energy released by this exergonic flow rotates the enzyme, catalysing the synthesis of ATP from ADP and . With no gradient, there is no driving force, so ATP synthase cannot function. The cell's main source of ATP (most ATP comes from oxidative phosphorylation) is cut off.
Point 6 — Electrons never reach the final carrier.
Because rotenone blocks the very first step, electrons cannot reach Complex IV, where they would normally be passed to oxygen. The final reduction reaction () therefore cannot take place. The cell produces much less / no water as a by-product of oxidative phosphorylation.
Point 7 — Reduced NAD builds up; runs out.
The electrons blocked at Complex I are still attached to NADH. Because the chain cannot accept more electrons, NADH cannot be re-oxidised to . The pool of in the mitochondrion therefore falls.
Point 8 — Earlier stages of respiration slow down.
Glycolysis, the link reaction and the Krebs cycle all need (and FAD) as electron acceptors. Without these reactions stall (or, in the case of glycolysis, switch to lactate fermentation in some tissues). Less pyruvate enters the link reaction, less acetyl-CoA enters the Krebs cycle, and the small amounts of ATP made by substrate-level phosphorylation in glycolysis and the Krebs cycle also fall. (This is an indirect but very important consequence — it is why rotenone is highly toxic: oxidative phosphorylation itself produces most ATP, but the cell can still be damaged by the secondary block on glycolysis and the Krebs cycle.)
Key Takeaways
- Blocking any one step in the ETC has knock-on effects throughout aerobic respiration.
- ATP production by oxidative phosphorylation depends on three things: electron flow, a proton gradient, and functional ATP synthase. Remove any one and ATP synthesis halts.
- Water is a by-product of electron transport (the reduction of at Complex IV), not a by-product of ATP synthase.
- Re-oxidation of NADH is essential to keep the earlier stages of respiration running — it is the link between the substrate-level and oxidative stages.
Common Mistakes
- Saying that rotenone 'stops respiration' without explaining the chain of events — the mark scheme rewards the explanation (no electron flow → no proton gradient → no ATP), not the conclusion.
- Confusing the direction of proton flow: protons are pumped out of the matrix into the intermembrane space, and they diffuse back in through ATP synthase.
- Saying that water is made 'by respiration' without specifying that it is the electrons reaching at the end of the chain that combine with to form water.
- Stating that glycolysis and the Krebs cycle are unaffected — they are heavily dependent on regeneration by the ETC.
- Confusing the roles of oxygen: oxygen is the terminal electron acceptor (combines with electrons and to form water), not the thing that is 'used up' directly in ATP synthesis.
Things to Be Careful About
- 'Suggest and explain' requires both elements for every point: state the effect, then state why it occurs.
- The question is asking for the overall effect on the cell, so a good answer integrates the ATP and water consequences with the knock-on effects on and the earlier stages.
- Stick to the named products (ATP and water) and the linked concept of regeneration — do not drift into unrelated detail (e.g. the specific name of the first carrier, the number of ATP per NADH, etc.) unless it earns a mark.
- Use precise terms: 'electron transport chain' (not 'respiratory chain'), 'proton gradient' (not 'concentration gradient'), 'ATP synthase' (not 'ATPase', although the mark scheme may accept either).
- Significant quantities matter: 'no / less / fewer' is the wording the mark scheme uses; be consistent and do not over-state absolute 'zero' unless you are confident.
LibertyLink® soybean is a genetically modified crop. It was first grown in 1996 and used in food products from 1998. It has been grown in 6 countries and used in food products in 21 countries.
Table 8.1 summarises the modifications made to the soybean plant to produce LibertyLink® soybean.
Table 8.1
| name of introduced gene | gene donor organism | gene product | function of gene product |
|---|---|---|---|
| pat | Streptomyces viridochromogenes | phosphinothricin -acetyltransferase | stops action of glufosinate, a herbicide |
Explain how the modification made to produce LibertyLink® soybean may help to solve the global demand for food.
Answer
- LibertyLink® soybean is resistant to the herbicide glufosinate (so the crop is not harmed when the field is sprayed).
- Glufosinate can therefore be sprayed to kill weeds / unwanted plants in the field.
- This reduces competition between the soybean and weeds for resources such as sunlight, water and soil minerals.
- As a result, a higher yield / more crop is harvested, helping to meet the global demand for food.
See answer.
Background Concept
LibertyLink® soybean carries the pat gene, which was isolated from the bacterium Streptomyces viridochromogenes. The gene encodes phosphinothricin N-acetyltransferase (PAT), an enzyme that inactivates glufosinate — the active ingredient of the Liberty® herbicide. Glufosinate normally inhibits glutamine synthetase, causing a lethal build-up of ammonia in plant cells. When PAT is present, glufosinate is acetylated and no longer toxic, so the soybean survives while surrounding weeds die.
The wider context is the use of herbicide-tolerant GM crops as part of modern, large-scale agriculture. Weeds compete with the crop for the same limited resources: light (the energy source for photosynthesis), water (the solvent and reactant in photosynthesis), and soil minerals such as nitrates and phosphates (needed to make proteins, nucleic acids and ATP). If weeds are removed, the crop can grow faster and produce more biomass and grain.
Understanding the Question
The command word is "explain", so the answer must link the genetic modification (resistance to glufosinate) to the agricultural benefit (more food produced). The mark scheme rewards a chain of reasoning: resistance → spray kills weeds → less competition → higher yield. The candidate does not need to describe how the pat gene was inserted, only what it lets the farmer do.
Approach
Identify the gene product (PAT) and what it does (detoxifies glufosinate). Then move from the cellular effect to the field-scale effect and finally to the harvest outcome. Use the named herbicide and a named resource for the mark.
Step-by-Step Reasoning
- Mark point 1: state that the LibertyLink® soybean is not harmed / killed by glufosinate because PAT inactivates the herbicide.
- Mark point 2: state that the farmer can therefore spray glufosinate over the field to kill weeds / unwanted plants.
- Mark point 3: link weed removal to reduced competition between the crop and weeds.
- Mark point 4: name a resource the weeds would otherwise take — e.g. sunlight, water, or a soil mineral such as nitrate or magnesium.
- Mark point 5: conclude that the crop produces a higher yield, helping to feed more people.
Key Takeaways
- Herbicide-resistance genes let a farmer spray an entire field with a broad-spectrum herbicide; only the weeds die.
- The biological benefit flows up: molecular resistance → field-scale weed control → reduced competition for resources → higher yield.
- GM herbicide-tolerant crops are a real, commercial example used worldwide.
Common Mistakes
- Saying only "it is resistant to herbicide" without going on to explain what that lets the farmer do (no link to weeds or yield).
- Naming "pesticide" instead of "herbicide". Glufosinate targets plants, not insects.
- Saying the soybean itself kills the weeds — it does not; the herbicide does, and only because the crop is unaffected.
- Stopping at "more food is produced" without mentioning reduced competition for a resource.
Things to Be Careful About
- A full "explain" answer needs a reason for each claim, not just a list of effects.
- Always name at least one resource (light, water, or a mineral) when discussing competition — "nutrients" on its own is too vague.
- Stay on the pat / glufosinate system described in Table 8.1; do not import Bt or insect-resistance ideas from other GM crops.
Name the type of enzyme that could be used to cut out the pat gene from S. viridochromogenes.
Answer
Restriction (endonuclease) enzyme.
Restriction (endonuclease) enzyme.
Background Concept
To cut the pat gene out of the S. viridochromogenes genome, the molecule that is being manipulated is DNA. DNA cannot be cut at random — it must be cut at precise, predictable positions so that the same piece can later be inserted into a plasmid that has matching "sticky ends".
Restriction enzymes (also called restriction endonucleases) are produced naturally by bacteria as part of a defence system against bacteriophage infection. Each enzyme recognises a specific short palindromic sequence of bases (for example, EcoRI recognises GAATTC) and cuts the phosphodiester backbone within or near that sequence. The cut produces either blunt ends or, more usefully, short single-stranded overhangs ("sticky ends") that can base-pair with complementary sticky ends on a cut plasmid.
Understanding the Question
The question asks for the type of enzyme that cuts the pat gene out of the donor organism's DNA. A precise one-word answer is required.
Approach
Recall that DNA is cut into fragments by restriction enzymes and that the alternative — random shearing — is not useful in gene technology. The mark scheme accepts either "restriction enzyme" or the more formal "restriction endonuclease".
Step-by-Step Reasoning
- DNA must be cut at known sequences so that the pat gene can be isolated cleanly.
- The class of enzyme that performs sequence-specific cuts in DNA is the restriction endonuclease.
- Therefore, the answer is "restriction enzyme" (or "restriction endonuclease").
Key Takeaways
- Restriction enzymes are the molecular "scissors" of gene technology.
- They are sequence-specific, which is what makes gene transfer reproducible.
Common Mistakes
- Writing "endonuclease" alone — this is acceptable in context, but "restriction endonuclease" is clearer.
- Confusing them with ligase (which joins DNA) or with DNA polymerase (which synthesises DNA).
- Writing "lyase" — that is a different class of enzyme.
Things to Be Careful About
- The examiner accepts either form of the name. Either "restriction enzyme" or "restriction endonuclease" scores the mark.
Name the enzyme that could be used to join the pat gene to a plasmid by forming phosphodiester bonds.
Answer
(DNA) ligase.
(DNA) ligase.
Background Concept
Once the pat gene has been cut out of S. viridochromogenes DNA with a restriction enzyme, the gene and the plasmid vector have complementary sticky ends. They will base-pair spontaneously, but the sugar–phosphate backbones are still nicked where the strands have been cut. To make a continuous, stable recombinant DNA molecule, these nicks must be sealed.
DNA ligase catalyses the formation of phosphodiester bonds between the 3′-OH of one nucleotide and the 5′-phosphate of the next, joining the fragments covalently. The energy for the reaction usually comes from hydrolysing ATP (or, in some ligases, NAD⁺). The result is an intact recombinant plasmid carrying the pat insert.
Understanding the Question
The question gives the function directly — "form phosphodiester bonds" and "join the pat gene to a plasmid" — and asks for the name of the enzyme that does it. This is a one-word recall answer.
Approach
Link the function described (forming phosphodiester bonds between DNA fragments) to the enzyme name. The mark scheme accepts "(DNA) ligase".
Step-by-Step Reasoning
- A phosphodiester bond between two nucleotides is the linkage of a DNA backbone.
- The enzyme that creates these bonds during DNA joining in vitro is DNA ligase.
- The question is also explicit that the substrate is the pat gene and a plasmid — both DNA — so the qualifier "DNA" is appropriate.
Key Takeaways
- Ligase is the molecular "glue" of gene technology — it pairs with restriction enzymes.
- Together, a restriction enzyme + ligase are the minimum toolkit for making recombinant DNA.
Common Mistakes
- Writing "ligase" without any qualifier is fine, but "DNA ligase" is more precise and avoids confusion with other ligases.
- Confusing ligase with DNA polymerase (which synthesises new DNA strands) or with reverse transcriptase (which makes cDNA from mRNA).
Things to Be Careful About
- The mark scheme lists "(DNA) ligase" with "DNA" in brackets, meaning the qualifier is optional but acceptable. Either scores the mark.
Suggest reasons why LibertyLink® soybean is used in food products in 21 countries but only grown in 6 countries.
Answer
- Some of the 21 countries have an unsuitable climate, weather or soil for growing soybean (LibertyLink® or any variety), so they import soy products instead.
- Other countries have not granted regulatory approval for growing GM crops, or have actively banned the cultivation of LibertyLink® soybean, although they allow its processed food to be imported.
- Public or activist opposition to GM crops in some countries prevents commercial cultivation, even where regulations would otherwise allow it.
- Some countries do not have enough suitable agricultural land available to grow soybean on a large scale.
- A few countries have banned the use of the herbicide glufosinate itself, removing the agronomic reason to grow the resistant variety.
See answer.
Background Concept
LibertyLink® soybean was first commercialised in 1996, and since then its use in food products has spread faster than its cultivation. The 21 countries that use it as a food ingredient include nations that are net importers of soy (e.g. for animal feed, oil, processed protein), while the 6 countries that grow it tend to be large agricultural producers with permissive regulation. The mismatch between "used in" and "grown in" is therefore a question of why a country would import a product without producing it.
The reasons cluster into five families: biophysical (climate and soil), regulatory (GM laws and herbicide bans), socio-political (public/activist opposition), economic (land availability and cost) and trade (some countries buy cheap soy from elsewhere rather than growing it).
Understanding the Question
The command word is "suggest", so the candidate is expected to come up with plausible reasons, not recall a single fact. The mark scheme accepts any three distinct, sensible points from the list it gives, and an AVP (any valid point) is also credited.
The structure of the answer is: a country is on the "used in" list but not the "grown in" list. Why? Because something about the country prevents cultivation but not import.
Approach
Think of the 21 countries as a mixed group: some have climates or soils that simply cannot grow soybean profitably; others can grow soybean but have chosen not to grow this GM variety. Distinguish between reasons that apply even to non-GM soybean (climate, land) and reasons that apply specifically to LibertyLink® (regulation, public opposition, glufosinate ban).
Step-by-Step Reasoning
- Mark point 1: biophysical unsuitability. Soybean needs warm, temperate climates with adequate rainfall. Many of the 21 user countries are too cold, too dry, or have the wrong soil type, so they import soy rather than grow it.
- Mark point 2: regulatory. The EU, for example, has had a slow and politically cautious approval process for GM cultivation. Many countries will accept imported GM food that has been approved as safe but will not allow domestic farmers to plant it.
- Mark point 3: public/activist opposition. Even where regulation is permissive, consumer or activist pressure can deter cultivation (e.g. opposition to "frankencrops").
- Mark point 4: land. Some countries are small, heavily urbanised or have most of their land under other crops; they have no spare agricultural land for soybean.
- Mark point 5: herbicide ban. If glufosinate itself is banned in a country, growing LibertyLink® soybean loses its point, so the country simply imports conventional soy or non-GM soy.
Key Takeaways
- Adoption of a GM crop is governed by more than just agronomic performance — regulation, public opinion and trade policy all matter.
- A country can consume a GM product while still opposing its cultivation. "Use" and "grow" are decoupled.
- This is a recurring theme in A2 Biology: socio-economic context shapes the real-world uptake of biotechnology.
Common Mistakes
- Saying "people don't like GM food" — this would explain why countries are on neither list. The question is specifically about countries that import but do not grow.
- Repeating the same idea twice in different words (e.g. "the government doesn't allow it" and "it's illegal").
- Conflating bans on the crop with bans on the herbicide — these are separate regulatory decisions.
Things to Be Careful About
- The question says "LibertyLink® soybean" specifically, so where possible refer to glufosinate (the matching herbicide) rather than generic weedkillers.
- "Suggest" requires plausible, reasoned points, not single-word answers. A short explanation is needed for full credit on each mark.
- Three marks = three distinct ideas, so do not pad one point into three sentences.
Fig. 9.1 shows a longitudinal section of a human kidney.
Fig. 9.1
Name the regions of the kidney labelled X and Y in Fig. 9.1.
X ______
Y ______
Answer
X: (renal) pelvis
Y: medulla
X: (renal) pelvis; Y: medulla
Background Concept
The human kidney has a characteristic gross structure visible in a longitudinal (sagittal) section. From outside in, the regions are: an outer cortex (paler, granular appearance — it contains the renal corpuscles and convoluted tubules), an inner medulla (darker, organised into cone-shaped pyramids whose striated appearance comes from the parallel loops of Henle and collecting ducts), and a central renal pelvis (the funnel-shaped cavity that collects urine and funnels it into the ureter). Between the pyramids of the medulla and the cortex, finger-like extensions of cortex called renal columns project inward. The renal pelvis is continuous with the ureter at the hilum, where the renal artery, renal vein and ureter enter and leave the kidney.
Understanding the Question
The candidate is given a photograph of a bisected kidney with two labels, X and Y, and must name the regions pointed to. X is in the central cavity of the kidney; Y is in the striated inner zone between the cortex and the pelvis. The question uses the command word "Name" — the candidate simply has to give the correct anatomical term, no description is needed.
Approach
Recall the layered organisation of the kidney from outside to inside: cortex → medulla → pelvis. Match each label's position on the photograph to the correct term.
Step-by-Step Reasoning
- X is in the centre of the kidney, where the branching white cavity is visible. This is the renal pelvis, the chamber that collects urine from the calyces before passing it into the ureter. (1 mark)
- Y is in the middle zone of the kidney, between the pale outer cortex and the central pelvis. The darker, striated appearance comes from the parallel arrangement of collecting ducts and loops of Henle. This is the medulla. (1 mark)
- The outermost rim — not labelled here — would be the cortex.
Key Takeaways
- The kidney is organised into three main regions: cortex (outer), medulla (middle, pyramidal), and pelvis (central cavity).
- Recognising a longitudinal section of a kidney is a routine Paper 2 skill.
Common Mistakes
- Confusing pelvis with ureter — the pelvis is the internal collecting chamber, while the ureter is the tube leading from the pelvis to the bladder.
- Confusing medulla with cortex — students often label the lighter outer band as the medulla; the medulla is the darker, striated, inner zone.
- Writing "renal pyramid" instead of "medulla" — the pyramids are subdivisions of the medulla and are not the same as the medulla as a whole.
Things to Be Careful About
- Always read the position of the arrow on the photograph carefully, not the line on the page — Y points to the middle band, not the outer band.
- Use the correct anatomical name; "pelvis" on its own is acceptable, but "renal pelvis" is more precise and is credited.
A biosensor can be used to measure the concentration of glucose in urine.
Outline how a biosensor measures the concentration of glucose in urine.
Answer
- Glucose oxidase is immobilised on the electrode / strip of the biosensor.
- The enzyme catalyses: glucose + O₂ → gluconic acid + H₂O₂.
- The H₂O₂ produced is oxidised at the electrode, releasing electrons (e⁻).
- The magnitude of the resulting current / voltage is proportional to the concentration of (H₂O₂ /) glucose in the urine sample.
- The biosensor converts the signal into a digital / numerical reading on a display.
Any four of the above points for 4 marks.
Glucose oxidase oxidises glucose to H₂O₂; H₂O₂ is oxidised at an electrode, generating a current proportional to glucose concentration, which is shown as a digital reading.
Background Concept
A biosensor combines a biological recognition element (an enzyme, antibody, or whole cell) with a physical transducer that converts the biological event into a measurable signal — most often an electrical one. The classic glucose biosensor used in clinical dipsticks and handheld meters uses the enzyme glucose oxidase (GOD). Glucose oxidase catalyses the oxidation of β-D-glucose by molecular oxygen, producing gluconolactone (which hydrolyses to gluconic acid) and hydrogen peroxide (H₂O₂):
The H₂O₂ produced can be detected electrochemically because it is readily oxidised at a platinum electrode, releasing electrons. The resulting current is proportional to the rate of H₂O₂ production, which in turn is proportional to the glucose concentration in the sample. The current is then converted to a digital reading (in mmol L⁻¹ or mg dL⁻¹) by the meter's electronics.
Understanding the Question
The question asks the candidate to outline how a biosensor measures glucose in urine. "Outline" means to give the main points in a logical order — a short structured description covering the enzyme, the reaction, the signal, and the read-out. Four marks are available, so four clear points are needed.
Approach
Follow the chain: enzyme on the strip → reaction producing H₂O₂ → electrochemical detection of H₂O₂ → proportional current → digital display. The mark scheme explicitly looks for these stages and the proportionality between current and concentration.
Step-by-Step Reasoning
- Recognition element: Glucose oxidase is immobilised on the test strip / electrode of the biosensor. Immobilisation lets the enzyme be reused and keeps it in contact with the sample. (1 mark)
- Specific reaction: Glucose in the urine is oxidised by O₂ (with glucose oxidase as catalyst) to produce H₂O₂. (1 mark)
- Transduction: The H₂O₂ diffuses to the electrode, where it is oxidised, releasing electrons (or producing O₂ + H⁺ + e⁻). (1 mark)
- Quantification: The flow of electrons produces a small current / voltage whose magnitude is proportional to the rate of H₂O₂ formation — and therefore to the glucose concentration in the original sample. (1 mark)
- Read-out (AVP worth a mark): The current is converted to a digital / numerical display giving the glucose concentration.
Any four of the five creditable points score the four marks.
Key Takeaways
- A biosensor = biological recognition element + transducer + display.
- Glucose biosensors use glucose oxidase to generate H₂O₂, which is detected electrochemically.
- The signal magnitude is proportional to the analyte concentration, allowing quantitative measurement.
- Biosensors are specific (glucose oxidase only acts on glucose) and fast, which is why they have replaced older chemical strip methods in clinical use.
Common Mistakes
- Stating only that "the enzyme reacts with glucose" without naming glucose oxidase — the name of the enzyme is the specific marking point.
- Omitting the proportionality between current and concentration — without this, the sensor would be qualitative, not quantitative.
- Saying the biosensor "measures glucose directly" — it measures the current produced by H₂O₂ breakdown, and only infers glucose from that.
- Confusing glucose oxidase with glucose dehydrogenase (a different enzyme used in some modern meters; not the one credited on CIE mark schemes).
- Writing about colour change — that is how a chemical test strip (e.g. Clinistix) works, not a biosensor. The biosensor's read-out is a digital/electrical value, not a colour comparison.
Things to Be Careful About
- Use the exact term glucose oxidase (not just "enzyme").
- Mention the immobilised nature of the enzyme, since this is a defining feature of a biosensor (as opposed to a free-enzyme assay).
- Make the link glucose → H₂O₂ → current explicit, and state the proportionality between current and concentration.
- Give the digital / numerical nature of the read-out — this is what distinguishes a biosensor from a chemical colour strip.
Explain the relationship between genes, proteins and phenotype, with reference to two examples of genetic diseases in humans.
Answer
A gene is a length of DNA that codes for a specific polypeptide. A mutation in a gene can produce a non-functional or abnormal polypeptide, which alters the cell's biochemistry and so produces an altered observable characteristic (phenotype).
Sickle cell anaemia
- The mutant HBB gene codes for an abnormal -globin polypeptide, producing haemoglobin S (HbS); the allele is codominant.
- HbS is less soluble and polymerises into long rod-shaped fibres at low tension, distorting red blood cells into a sickle shape.
- Sickled red blood cells block capillaries, restricting blood flow and causing painful crises and oxygen deprivation of tissues.
Albinism
- The mutant TYR gene codes for non-functional tyrosinase enzyme; the allele is recessive.
- Tyrosinase normally catalyses the conversion of tyrosine into melanin, so no melanin is produced.
- The lack of melanin results in very pale/fair skin and hair, and a pink (transparent) iris through which retinal blood vessels are visible.
Sickle cell: mutant HBB → abnormal β-globin (HbS, codominant) → HbS polymerises into rods at low O₂ → sickled RBCs block capillaries causing pain. Albinism: mutant TYR → non-functional tyrosinase (recessive) → no melanin produced → pale skin/hair and pink iris.
Background Concept
The central dogma of molecular biology states that DNA → RNA → protein. A gene is a specific sequence of DNA that carries the instructions to assemble a particular polypeptide at the ribosome. The polypeptide folds into a functional protein (often an enzyme, receptor, structural component or transport molecule) whose activity determines a particular biochemical feature of the cell. That biochemical feature, in turn, contributes to the visible or measurable phenotype of the organism — its appearance, physiology or behaviour.
A mutation is a change in the base sequence of a gene. Mutations can be:
- Substitutions (one base swapped for another) — often missense, producing a single amino-acid change, as in sickle cell anaemia.
- Insertions / deletions — shift the reading frame, almost always producing a completely non-functional protein.
- Trinucleotide repeat expansions — extra copies of a three-base motif are added, as in Huntington's disease.
Depending on the gene affected and the protein's role, a single base change can produce a devastating disease. The mark scheme gives four classic examples: albinism (TYR), sickle cell anaemia (HBB), haemophilia (F8) and Huntington's disease (HTT). You only need two, but you must know, for each, the gene, the protein it codes for, the inheritance pattern of the allele, the biochemical defect and the physiological/visible phenotype.
Understanding the Question
You are asked to explain the gene–protein–phenotype relationship, using two named human genetic diseases as worked examples. "Explain" means you must show the chain: gene → abnormal protein → biochemical consequence → phenotype. Marks are awarded per correct link in this chain, not for naming diseases alone.
The command word is explain, not describe or state. An answer that simply lists "sickle cell is caused by HBB" without the mechanism scores very little; the chain of causation is what the examiner wants.
Approach
- Open with the general principle in one or two sentences (gene codes for protein; mutation changes protein; protein change alters phenotype). This frames your answer and shows the examiner you understand the theme.
- Pick two diseases you know well. The strongest pairings are sickle cell anaemia (codominant, biochemical mechanism is well known) and albinism (recessive, simple enzyme defect), but any two of the four listed in the mark scheme are acceptable.
- For each disease, present the information in a tight causal chain: mutant gene → abnormal/non-functional protein → biochemical consequence → phenotype. Cover all four links for full marks.
- Be precise with terminology: name the gene in italics, give the protein's correct name, and use the correct dominance term (recessive / dominant / codominant / sex-linked).
Step-by-Step Reasoning
General principle
A gene is a sequence of DNA bases that codes for a polypeptide. A mutation in the gene may produce a polypeptide with an altered amino-acid sequence, which fails to fold correctly or loses its active site. The non-functional protein can no longer carry out its normal role in the cell, so a step in metabolism is blocked or altered — producing the disease phenotype.
Example 1 — Sickle cell anaemia
- Gene: the HBB gene on chromosome 11, which normally codes for the β-globin chain of haemoglobin.
- Mutation and protein: a single base substitution changes the codon for the 6th amino acid from glutamic acid to valine, producing an abnormal β-globin and therefore abnormal haemoglobin called HbS.
- Inheritance: the allele HbS is codominant with the normal HbA allele — heterozygotes (HbAHbS) make both forms and have the sickle cell trait; homozygotes (HbSHbS) have the full disease.
- Biochemical detail: HbS is much less soluble than HbA at low oxygen tension. The deoxygenated HbS molecules polymerise into long, rigid rod-shaped fibres inside the red blood cell.
- Phenotype: the fibres distort the biconcave RBC into a rigid sickle shape. Sickled cells are inflexible, so they block capillaries, restricting blood flow and oxygen delivery, causing painful crises, chronic anaemia and (over time) organ damage.
Example 2 — Albinism
- Gene: the TYR gene, which normally codes for the enzyme tyrosinase.
- Mutation and protein: the mutation produces non-functional tyrosinase.
- Inheritance: the mutant allele is recessive — only homozygous recessive (tyrtyr) individuals show the phenotype; heterozygotes (Tytr) have a normal phenotype and are carriers.
- Biochemical detail: tyrosinase catalyses the first step in the conversion of the amino acid tyrosine → melanin. With no functional enzyme, no melanin is produced.
- Phenotype: without melanin pigment, the skin and hair are very pale / fair, and the iris is pink / transparent because light passes through it and the retinal blood vessels show through. Affected individuals are also highly sensitive to UV and have vision problems.
Key Takeaways
- The gene–protein–phenotype chain is: DNA sequence (gene) → polypeptide → folded protein → biochemical role → visible/physiological trait.
- A mutation only causes disease if the altered protein has a critical function — most mutations are neutral or silent precisely because the change is in a redundant codon or non-coding region.
- Each named disease has a specific gene, specific protein, specific dominance pattern and specific mechanism. Vague generalisations ("it affects the blood", "it's a genetic disease") earn no marks.
- All four mark-scheme diseases (TYR, HBB, F8, HTT) are required knowledge for A-level. Know at least two confidently.
Common Mistakes
- Naming the wrong gene or protein — the gene is HBB (the disease is haemoglobin not "red blood cell"), the protein is tyrosinase not "melanin" (melanin is the product, not the protein directly coded for by TYR).
- Confusing dominance patterns — sickle cell is codominant (heterozygotes show both phenotypes), not recessive. Huntington's is dominant. Haemophilia is X-linked recessive (often written as simply "recessive" but the mark scheme accepts "sex-linked").
- Giving the phenotype without the biochemistry — saying "sickle cells cause pain" without explaining why (low O₂ → HbS polymerises → cells sickle → block capillaries) loses the biochemical mark.
- Reversing cause and effect — "lack of tyrosinase causes no melanin" is correct; "no melanin causes lack of tyrosinase" is wrong. The gene codes for the protein; the protein produces the pigment.
- Using "blood cells" instead of "red blood cells" / "erythrocytes" — be precise.
- Forgetting the inheritance term — many candidates earn the biochemical and phenotype marks but not the allele-type mark because they never state whether the allele is dominant, recessive or codominant.
Things to Be Careful About
- Use italics for gene symbols (HBB, TYR) — Cambridge examiners are strict about this convention.
- "Haemoglobin" is the protein complex; "β-globin" is one of its polypeptide chains; "HbS" is the abnormal variant. Don't mix these up.
- "Tyrosinase" is the enzyme; "tyrosine" is the substrate; "melanin" is the pigment product. Confusing any of these costs marks.
- For sickle cell, mention that polymerisation occurs under low oxygen tension — without this trigger the mechanism is incomplete.
- The mark scheme allows error carried forward (ecf) within a chain, so if you misname the gene but the rest of the biochemistry and phenotype for that disease is correct, you will still earn the subsequent marks.
- Do not add unrelated diseases that are not in the syllabus list (e.g. cystic fibrosis, PKU) unless you can supply all four required elements; the safer option is to choose from the four named in the mark scheme.









